Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1180 a.a., exonuclease V (RecBCD complex), beta subunit (NCBI) from Escherichia coli BW25113

 Score =  980 bits (2534), Expect = 0.0
 Identities = 558/1199 (46%), Positives = 759/1199 (63%), Gaps = 33/1199 (2%)

Query: 8    LAVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVV 67
            +A TLD LR PL G RLIEASAGTGKT+TIA LYLRL+LG G        PL+V+++LVV
Sbjct: 4    VAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GSAAFPRPLTVEELLVV 62

Query: 68   TFTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMD 127
            TFTEAATAELR RIR  +H+ R+A  R  +D+PL   LL E  D   A   LL AERQMD
Sbjct: 63   TFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMD 122

Query: 128  EAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASE 187
            EAA+FTIHGFCQRML  NAFESG  FE + + DES L+ Q  AD+WRR  YPLP  +A  
Sbjct: 123  EAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQV 182

Query: 188  VRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQI-ARICEIKQHWLVEREE 246
            V   W  P ALL +I  YL G    +  P  + +  A + AQI ARI  +KQ W     E
Sbjct: 183  VFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGE 242

Query: 247  IEPAV--TGSDLHKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKSKKGN 304
            ++  +  +G D  K +++   + +  + AWA+ ET+   +P  LE+F+Q  L  ++K G 
Sbjct: 243  LDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKAGG 302

Query: 305  P-PQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL 363
              P+  LFE I+  LAEP+S++  ++  A+   R  +A+ K     L FDD+L++L +AL
Sbjct: 303  ETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSAL 362

Query: 364  DNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIYAF 423
             ++   +L   IRT +PVAMIDEFQDTDP QY IF R++   P+  LL+IGDPKQAIYAF
Sbjct: 363  RSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAF 422

Query: 424  RGADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVAAS 483
            RGADIFTY+KAR++V+AHYTL TNWRS+  MV +VN++FS     F++  +IPF PV ++
Sbjct: 423  RGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFR-EIPFIPVKSA 481

Query: 484  PGADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASGAAT 543
                   +  +G+ QPA+  W  E   +     DY + MA+ CAAQI+  L A   G A 
Sbjct: 482  GKNQALRFVFKGETQPAMKMWLME--GESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEAL 539

Query: 544  FHRGE---AIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERL 600
               G+    + A D++VLVR+  EA  VRDAL+   I SVYLSNRDSVF +  AQ++  L
Sbjct: 540  LMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWL 599

Query: 601  LLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLP 660
            L AV  PE E  LR+A+A+++  L A +++ LNNDE+ W+ ++ EF  YR++W +RGV+P
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMP 659

Query: 661  MLRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAA 720
            MLRA+++ R+IAE  LA + GER LTD LHISELLQ+A  +++S+  L+R+L+Q + +  
Sbjct: 660  MLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPD 719

Query: 721  QGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATT 780
                 +  Q  RLES++ LVQIVTIHKSKGLEYPLV+LPF+ ++R   +  Y+D  S   
Sbjct: 720  ---SNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEA 776

Query: 781  WVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPL-RNGNSSQEPTSAHRS 839
             +DL    E++  A+ ERLAEDLRLLYVALTR+V+ C +G+APL R     +  T  H+S
Sbjct: 777  VLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQS 836

Query: 840  AMGFLLQDGQEGGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELS 899
            A+G LLQ G+    A L+  +   C++  D+          Q +Q   +   EL A+ L 
Sbjct: 837  ALGRLLQKGEPQDAAGLRTCIEALCDD--DIAWQTAQTGDNQPWQVNDVSTAELNAKTLQ 894

Query: 900  QAIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFN 959
            +     WRVTSYSGL  +      D +  L        D+D+A     + +E    +   
Sbjct: 895  RLPGDNWRVTSYSGLQQRGHGIAQDLMPRL--------DVDAAGV--ASVVEEPTLTPHQ 944

Query: 960  FPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLST 1019
            FPRGA PGTFLHSLFE++DF Q    +PN   + E +E    ES+W PVL + +  VL  
Sbjct: 945  FPRGASPGTFLHSLFEDLDFTQPV--DPNW--VREKLELGGFESQWEPVLTEWITAVLQA 1000

Query: 1020 PLDGKALRLQQIMAAQRLTELEFLLPI-EVLDAPTLNRITQRHDPLSAHAGDLGFHAVQG 1078
            PL+   + L Q+ A  +  E+EF LPI E L A  L+ + ++ DPLSA    L F  V+G
Sbjct: 1001 PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRG 1060

Query: 1079 MLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHR 1138
            MLKGFIDLVF+++GRYY+LD+KSN LG+D +AY  Q + +AM  HRYDLQYQ+Y LALHR
Sbjct: 1061 MLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120

Query: 1139 FLRSRLAHYNYEQHFGGVFYLFLRGMD-GRGDQGVFHTKPSLALLDELDGLIAGRELAQ 1196
            +LR R+A Y+YE HFGGV YLFLRG+D     QG++ T+P+  L+  +D + AG  L +
Sbjct: 1121 YLRHRIADYDYEHHFGGVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEE 1179