Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1138 a.a., ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) from Kangiella aquimarina DSM 16071

 Score = 89.0 bits (219), Expect = 2e-21
 Identities = 124/495 (25%), Positives = 211/495 (42%), Gaps = 73/495 (14%)

Query: 383 MIDEFQDTDPLQYSIFSRLYLDYPQCG---LLMIGDPKQAIYAFRGADIFTYIKARN--- 436
           ++DEFQDT   QY +  +L   +       L ++GDP Q+IY FR A++  +I+AR+   
Sbjct: 411 LVDEFQDTSYGQYQLIEKLTAGWQADDGRTLFVVGDPMQSIYRFREANVGLFIQARDHGI 470

Query: 437 -QVNAHY-TLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLE 494
             +   +  L +N+RSS  +V  VN+ F++    F   DD     V+ +     ++ +  
Sbjct: 471 GDIRLEFLQLTSNFRSSETVVDWVNKSFATI---FPGYDDAVLGAVSLAEATATKNSTDH 527

Query: 495 GQVQPALTYWWPE-----DLDKPQSKTDYYAQMAEACAAQIQHILTASASGAATFHRGEA 549
            +V   + +   +     D D  +   D   Q A+A A QI  +LT              
Sbjct: 528 DKVDFKIFFGDDDNDSGSDYDSEEIINDAATQEAKAIAEQIAVLLT-------------E 574

Query: 550 IEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPED 609
               D+AVLVR  N    + +AL Q+ I+ V     + +       DI  LL  +  P+D
Sbjct: 575 YPEQDIAVLVRARNHGVAIIEALQQRSISYV-AEEFEELAEKQSVLDILTLLRVLIHPQD 633

Query: 610 ERLLRAAVASNLFALTASELDALNN-DENEWEQLIAEFRQYRRLWSERGVLPMLR--AVL 666
           +    A + S  F LT +++  + +   ++  +++ E+     L S++ +  + +  A+L
Sbjct: 634 KVAWIALLKSPWFGLTLTDITLIESIFGDDIYRILTEYSSVEGL-SQQAISTLAKQGAIL 692

Query: 667 -TQR-HIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLT-----QAMAD- 718
            T R  + ++ LA      W    LH+   L     E++     L F++     Q + D 
Sbjct: 693 ETHRGQLYQQPLAIQLEALW----LHLGGALLCQPNEVEQVYTFLDFVSSYEQNQVITDY 748

Query: 719 AAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESA 778
               L  S         +   V I+T+HKSKGLE+  VFLP      + ++G   + +  
Sbjct: 749 KPLLLAMSKLHAPPSREDDCRVSIMTMHKSKGLEFDTVFLP------QLNKGSSNNDKQL 802

Query: 779 TTW----------------VDLTGNEEALAK-----ADQERLAEDLRLLYVALTRAVYGC 817
             W                VD  G   +L K     + Q+   E  RLLYVA TRA +  
Sbjct: 803 MVWEEFPAQDDSSQYLMAPVDQVGESNSLYKFVNNFSRQKDRLESGRLLYVASTRAKHRL 862

Query: 818 FIGIAPLRNGNSSQE 832
           ++      + N  +E
Sbjct: 863 YLSCCGAVSYNQKEE 877



 Score = 33.1 bits (74), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 10/66 (15%)

Query: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83
          +++A AG+GKT  +    L+L+          A   + ++++ +TFT  A  E+++RI +
Sbjct: 19 IVQAPAGSGKTELLTQRVLKLL----------AVVQNPEEVVAITFTNKAAREMQNRIMQ 68

Query: 84 RLHDAR 89
           L+ A+
Sbjct: 69 SLYSAQ 74