Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1180 a.a., DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5) from Enterobacter asburiae PDN3

 Score =  999 bits (2583), Expect = 0.0
 Identities = 573/1195 (47%), Positives = 757/1195 (63%), Gaps = 39/1195 (3%)

Query: 9    AVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVT 68
            A +LD LR PL G RLIEASAGTGKT+TIA LYLRL+LG G        PLSV+++LVVT
Sbjct: 5    AESLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLG-GNAAFPRPLSVEELLVVT 63

Query: 69   FTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDE 128
            FTEAATAELR RIR  +H+ R+A  R ++D+PL  SLL E  D   A   LL AERQMDE
Sbjct: 64   FTEAATAELRGRIRSNIHELRIACLRQSTDNPLYASLLEEIADKQQAAQWLLLAERQMDE 123

Query: 129  AAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPLPISLASEV 188
            A++FTIHGFCQRML+ NAFESG  FE + + DES L+ Q  AD+WRR  YPL   +A  V
Sbjct: 124  ASVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESVLRYQACADFWRRHCYPLQRDIAEAV 183

Query: 189  RRLWPAPSALLAEIAGYLSG-PPVKLTTPLMEGDLAALQQAQIARICEIKQHWLVEREEI 247
              LW  P ALL  I  YL G  PV  + P  +  LA+  +  IARI +IKQ W+    EI
Sbjct: 184  HALWKGPEALLRAIDRYLQGEAPVIKSPPPADETLASRHEKIIARIADIKQKWIESVGEI 243

Query: 248  EPAV--TGSDLHKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKSK-KGN 304
            +  +  +G D  K ++    + +  + AWAQ ET    +P  LE+F++  L+ ++K  G 
Sbjct: 244  DVIIENSGIDRRKFNRGNQGKWIDKISAWAQEETRGYQLPDALEKFSRRFLVERTKADGI 303

Query: 305  PPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAALD 364
             P+  LF  IE  LAEP++L   ++  A+   R  +A+ K     L FDD+L++L AAL 
Sbjct: 304  VPEHPLFVAIETLLAEPLTLNDLMITRAMTEIRDAVAREKRRRGELGFDDMLSRLDAALC 363

Query: 365  NDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAIYAFR 424
            ++    L   IRT +PVAMIDEFQDTDP QY IF R++   P   LL+IGDPKQAIYAFR
Sbjct: 364  SENGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWRQQPGTALLLIGDPKQAIYAFR 423

Query: 425  GADIFTYIKARNQVNAHYTLGTNWRSSAAMVAAVNQVFSSATHPFIYSDDIPFQPVAASP 484
            GADIFTY+KAR++V+AHYTL TNWRSS  MV +VN +FS     F++  +IPFQPV  + 
Sbjct: 424  GADIFTYMKARSEVDAHYTLDTNWRSSPGMVESVNALFSRMDTAFMFR-EIPFQPVKFAE 482

Query: 485  GADKRHWSLEGQVQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASGAATF 544
                  +   G+ QPA+ +W  +   +     DY   MA+ CAAQI+  L+A A G A  
Sbjct: 483  KNASLRFEFNGETQPAMNFWLLD--GEGYGVADYQNAMAQHCAAQIRDWLSAGAHGKALL 540

Query: 545  HRGE---AIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERLL 601
             +G+    ++A D+ VLVR+  EA ++RDAL+   I SVYLSNRDSVF +  AQ++  LL
Sbjct: 541  WKGDKPAPVKASDITVLVRSRQEAALIRDALTLLNIPSVYLSNRDSVFETLEAQEMLWLL 600

Query: 602  LAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLPM 661
             AV  PE E  LR+A+AS +  L A ++DALNNDE  W+ ++ EF +YR  W +RGV+ M
Sbjct: 601  QAVLAPERESTLRSALASAMLGLNARDIDALNNDEAAWDAVVEEFVRYREKWQKRGVMAM 660

Query: 662  LRAVLTQRHIAERWLAESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAAQ 721
            +R ++ QRHIAE  LA + GER LTD LHISELLQ+A  +++S+  L+R+L Q +AD   
Sbjct: 661  VRELMAQRHIAENMLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLAQQIADPN- 719

Query: 722  GLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATTW 781
                S  Q  RLES++ LVQIVTIHKSKGLEYPLV+LPF+ +YR   +  Y+D ES    
Sbjct: 720  --SNSSSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIANYRVQDQAFYHDRESFEAV 777

Query: 782  VDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPL--RNGNSSQEPTSAHRS 839
            +DL+  E +L  A+ ERLAEDLRLLYVALTR+V+ C +G+APL  R G  + E +  H S
Sbjct: 778  LDLSNAESSLELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLFRRRGEKTGE-SDFHLS 836

Query: 840  AMGFLLQDGQEGGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELS 899
            A+G L+Q G+    A L+Q +   C     V    P +     +Q P+L + +L AR++ 
Sbjct: 837  ALGRLIQHGEPKDAAGLRQCIESLCTE--HVALHIPSQPDNSRWQMPELRDSQLHARQVV 894

Query: 900  QAIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSI-- 957
            + I   WRVTSYSGL         D + +L        D+D+A    GA     E  +  
Sbjct: 895  RTIADDWRVTSYSGLQQHGQSIAQDLMPKL--------DVDAA----GAGSVPAEPVLTP 942

Query: 958  FNFPRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVL 1017
              FPRGA PGTFLHSLFEE+DF Q    E     +L++++S   +++W PVL   +  VL
Sbjct: 943  HQFPRGASPGTFLHSLFEELDFTQPVSEE----WVLKMLQSGGYDAQWQPVLTDWIRAVL 998

Query: 1018 STPLDGKALRLQQIMAAQRLTELEFLLPI-EVLDAPTLNRITQRHDPLSAHAGDLGFHAV 1076
              PL  + + L Q+ A  +  E+EF LPI   L A  L+ + + +DPLSA    L F  V
Sbjct: 999  HAPLTTQGISLNQLTAKDKQVEMEFYLPIASPLRAEALDALIREYDPLSAGCPPLNFRQV 1058

Query: 1077 QGMLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALAL 1136
            QGMLKGFIDLVF+++GRYY+LD+KSN LG+   AY    + SAM  HRYDLQYQ+Y LAL
Sbjct: 1059 QGMLKGFIDLVFRHEGRYYLLDYKSNWLGESSEAYTQDAMASAMQMHRYDLQYQLYTLAL 1118

Query: 1137 HRFLRSRLAHYNYEQHFGGVFYLFLRGMDGRGDQ-GVFHTKPSLALLDELDGLIA 1190
            HR+LR R+A Y YE HFGGV YLFLRG+D    + GVF T+P+  L++++D L A
Sbjct: 1119 HRYLRHRMADYRYEDHFGGVIYLFLRGVDANDPRSGVFSTRPAAELIEKMDNLFA 1173