Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1088 a.a., ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 65.1 bits (157), Expect = 3e-14
 Identities = 121/518 (23%), Positives = 194/518 (37%), Gaps = 76/518 (14%)

Query: 340 LAKAKSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFS 399
           L   K   + L   D    L      ++   + E++   Y   +IDEFQDT   Q+  F 
Sbjct: 345 LRDLKDEENILMISDANDFLKEITKENDAPFIYEKVGNQYKHFLIDEFQDTSGFQWDSFK 404

Query: 400 RLY---LDYPQCGLLMIGDPKQAIYAFRGADIFTYI-KARNQVNAHYT----LGTNWRSS 451
            L    L Y     L++GD KQ+IY +RG D+   + K    +         L TN+RS 
Sbjct: 405 PLLENSLGYEHTN-LVVGDVKQSIYRWRGGDMKLLLEKVEEDIGPSSIQVKGLDTNYRSL 463

Query: 452 AAMVAAVNQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDK 511
             +VA  N +FS+   P         +     PG   + +    Q  P+      E   K
Sbjct: 464 PNVVAFNNALFSAL--PAQLESTFERETGHQRPGILTKAYQDVAQKVPSAK---NEGDFK 518

Query: 512 PQSKTDYYAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDA 571
              + ++     E      +  + A         + +     D+A LVR  ++  M+ DA
Sbjct: 519 GLVRMEFLETSNEEEEPGYEEAVLAKIPEMVMTLQDQGYRPKDIAFLVRKKHQGAMITDA 578

Query: 572 LSQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDA 631
           L      +    + +  ++ DV  D           E   L +AA    L A       A
Sbjct: 579 L-----MAYKHEHPELEYSFDVVSD-----------ESMFLSKAATVKALIA-------A 615

Query: 632 LNNDENEWEQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAES----EGERWLTD 687
           LN   +  + +   F+     WS     P+   V +       WLAE     E E     
Sbjct: 616 LNYLADPADPV--PFQTMWFYWSSLNGKPISHEVFSSLE-KPAWLAEKIAAFEKEEQRIA 672

Query: 688 YLHISELLQQAT---------REIDSDQGLLRFLTQAMADAAQGLGG--------SDEQI 730
            L + ELL++            E+    G    +   +A+    L G        S+++ 
Sbjct: 673 RLPLMELLEELVDILGFNDLRTELAYISGFKEAVYDYVANNRADLSGFLNWWEENSEKRT 732

Query: 731 QRLESERRLVQIVTIHKSKGLEYPLVFLPF----VMSYRESS--EGKYYD-AESATTWVD 783
            ++      + I+TIHKSKGL+Y +V +PF    ++ Y + +     + D AE     + 
Sbjct: 733 VKIPEGHDAMPIMTIHKSKGLQYKVVLMPFLTWRIVDYSKDNIIWSPFRDTAEDVEAVIP 792

Query: 784 LTGNEEALAKADQERLAED--------LRLLYVALTRA 813
           LT  +E      Q    E+        L ++YVALTRA
Sbjct: 793 LTLKKELADSIFQPVHLEEVTMAYLDTLNMIYVALTRA 830



 Score = 46.2 bits (108), Expect = 1e-08
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 11/148 (7%)

Query: 24  LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83
           + ++SAG+GKTYT+   YL+L L         A P++   IL VTFT  AT E++ RI  
Sbjct: 8   IYKSSAGSGKTYTLTLEYLKLAL---------AQPMAFRGILAVTFTNKATQEMKGRILE 58

Query: 84  RLHDARLAF-ARGASDDPLLRSLLAEFTDHNLAVSLLLSA-ERQMDEAAIFTIHGFCQRM 141
            L   +     +   D  L++ L  +        S++LSA        ++ TI  F Q++
Sbjct: 59  VLGRLKNEVRPQEFLDQQLMQHLQLDEEGLKSRASVVLSAILHDYANFSVSTIDSFFQKV 118

Query: 142 LTQNAFESGSRFENEFVTDESRLKAQVV 169
           +   A E   + + +   D++ +  +VV
Sbjct: 119 VRAFAREIDLQAKFDVALDQAAVLERVV 146