Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

 Score = 56.6 bits (135), Expect = 7e-12
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 8/131 (6%)

Query: 342 KAKSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRL 401
           +AK   + L +DDLL   +  + +    +L + I   +   M+DE+QDT+ LQ S+   +
Sbjct: 201 EAKQIQNVLDYDDLLLYWAQMVSDP---ILADDIGNRFDHVMVDEYQDTNRLQASVL--M 255

Query: 402 YLDYPQCGLLMIGDPKQAIYAFRGA---DIFTYIKARNQVNAHYTLGTNWRSSAAMVAAV 458
            +     GL ++GD  Q+IY+FR A   +I  +    N      TL  N+RS+  ++AA 
Sbjct: 256 AMKPGGRGLTVVGDDAQSIYSFRAATVRNILDFPACFNPAADIITLDRNYRSTQPILAAA 315

Query: 459 NQVFSSATHPF 469
           N V   A   F
Sbjct: 316 NGVIDLARERF 326



 Score = 38.1 bits (87), Expect = 3e-06
 Identities = 53/188 (28%), Positives = 74/188 (39%), Gaps = 33/188 (17%)

Query: 21  GARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDR 80
           G  LI A AG+GKT T+A     L++    A+ R        +IL++TF+  A +E+  R
Sbjct: 30  GPLLIIAGAGSGKTNTLAHRVAHLIVNG--ADPR--------RILLMTFSRRAASEMSRR 79

Query: 81  IRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQR 140
           + R           GA+   +  +L    T H +   LL     Q+     FTIH     
Sbjct: 80  VERICKQ-----VIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLNIDFTIHDREDS 134

Query: 141 MLTQNAFESGSRFENEFVTDESRL--KAQVVADYWR------------RQFYPLPISLAS 186
               N      R E  F   ESR   K   +A Y R            RQ YP      S
Sbjct: 135 ADLMNLV----RHELGFSKTESRFPTKGTCLAIYSRAVNSQTPLKDILRQHYPWVADWQS 190

Query: 187 EVRRLWPA 194
           E++ L+ A
Sbjct: 191 ELKELFAA 198



 Score = 30.8 bits (68), Expect = 4e-04
 Identities = 40/138 (28%), Positives = 55/138 (39%), Gaps = 28/138 (20%)

Query: 710 RFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSE 769
           RFLT+   D       SD+    L  E  L  + TIH +KG E+  VF+  V+     S+
Sbjct: 535 RFLTELTLDPPDAT--SDQAGVPLLDEDYL-SLSTIHSAKGQEWRSVFILNVVDGCIPSD 591

Query: 770 GKYYDAESATTWVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLR---N 826
                                L     + L E+ RLLYVA+TRA     + I P R    
Sbjct: 592 ---------------------LGVGTSQELEEERRLLYVAMTRAKDNLSL-ITPQRFFTG 629

Query: 827 GNSSQEPTSAHRSAMGFL 844
           G SSQ     + +   F+
Sbjct: 630 GQSSQGDRHVYAARTRFI 647