Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., ATP-dependent DNA helicase PcrA from Acinetobacter radioresistens SK82

 Score = 68.9 bits (167), Expect = 1e-15
 Identities = 115/491 (23%), Positives = 197/491 (40%), Gaps = 101/491 (20%)

Query: 342 KAKSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRL 401
           + K   ++L +DD+L  ++  L + E   L   +  L  V ++DE QDT+PLQ+++   L
Sbjct: 180 RRKRERNFLDYDDILAIVAVHLQHSEA--LVNWVTRLCSVLLVDEMQDTNPLQWALLQPL 237

Query: 402 YLDYPQCGLLMIGDPKQAIYAFRGADI--FTYIKARNQVNAHYTLGTNWRSSAAMVAAVN 459
                +  L  +GD  Q+IY FRGAD     + K R        L  N+RS+  ++   N
Sbjct: 238 ---VGKIKLFCVGDDAQSIYGFRGADFENIHHFKERVPDAEVLNLDFNYRSTQEILDLSN 294

Query: 460 QVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKPQ-SKTDY 518
            +   +  P  Y   +     A   G   +      + + A   W  +DL K Q +   +
Sbjct: 295 WLLDKS--PLHYDKHL---IAARGRGIKPQLHLFSNEFEEA--NWIAQDLIKRQYTGAQW 347

Query: 519 YAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIA 578
           Y  M                                  +LVR+   AR +  AL    I 
Sbjct: 348 YEHM----------------------------------ILVRSSFTARHLEGALINANIP 373

Query: 579 SVYLSNRDSVFASDVAQDIERLLLAVWQPEDE------RLLRAAVASNLFALTASELDAL 632
             ++     + ++ V +D+  +L  V  P+D+        L   V     +  A EL  L
Sbjct: 374 YKFVGGVKLLESAHV-KDMLSMLRVVANPQDDIAWMRFLTLWNGVGDVGASKLAHELIQL 432

Query: 633 NNDENEWEQL----------IAEFRQYRRLWSERGVLPMLRAVLTQRHIAERWLAESEGE 682
           ++ +   E+L          I   +Q   L  E  V   L        + + +    E  
Sbjct: 433 SDIDMRCERLEQHGRVALKAILMMKQLDVLQHEVEVCISLAVEALSEQLEDNY-KNKEWS 491

Query: 683 RWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQI 742
           R L D+    +L++Q  R+ +S   L  FL + + +       S  +++R  +++ LV +
Sbjct: 492 RRLKDF----DLVKQLARKHNS---LAGFLEEYVLEPI-----SVSEVER-STDQDLVTL 538

Query: 743 VTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAED 802
           +TIH +KG E  + ++P V      S  +Y                 A A+ D +++ E+
Sbjct: 539 ITIHSAKGAEQKVCYVPHV------SPSQY---------------PHARAQGDFDQVEEE 577

Query: 803 LRLLYVALTRA 813
            R+LYVALTRA
Sbjct: 578 RRVLYVALTRA 588



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83
          L+ A AG GKT TI      L+             +  DQI ++TFT  A +E+  R+ +
Sbjct: 26 LVLAGAGCGKTKTIVARAAYLI----------DQGIPADQIQILTFTRRAASEIVTRVEQ 75

Query: 84 RL 85
           L
Sbjct: 76 HL 77