Pairwise Alignments

Query, 1208 a.a., exodeoxyribonuclease V subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1234 a.a., RecBCD enzyme subunit RecB from Acinetobacter radioresistens SK82

 Score =  297 bits (760), Expect = 4e-84
 Identities = 324/1260 (25%), Positives = 530/1260 (42%), Gaps = 147/1260 (11%)

Query: 21   GARLIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDR 80
            G  LIEASAGTGKTYT++ L +R+++               +QI+  TFT AA AEL+ R
Sbjct: 19   GLHLIEASAGTGKTYTLSSLIVRILI----------EKYLPNQIIATTFTRAAAAELKSR 68

Query: 81   IRRRLHDARLAF-------------ARGASDDPLLRSLLAEF-TDHNLAVSLLLSAERQM 126
            IR RL +A   F                   DPL + L  +F T        L     Q+
Sbjct: 69   IRSRLVEAYQYFNDCQDLTEIEMLHKAEQEKDPLYQVLCKQFSTQVGYVCERLKLVIDQL 128

Query: 127  DEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRR--QFYPLPIS- 183
            DE  + T+  F Q++L + AFESG     +   D      Q+V D  R   Q  P P+  
Sbjct: 129  DELFVSTLDSFSQKLLREFAFESGKIERAQLTEDAKAYSQQIVHDILREWIQAQPQPLID 188

Query: 184  --LASEVRRLWPAPSALLAEIAGYLSGPPVKLTTPLM-----EGDLAALQQAQIARICEI 236
              L S+  +      A++     + S   + +  P+M     E +L  L +  ++ +  +
Sbjct: 189  YLLLSKQLKNTDGYLAIVENSLNFSSAQFMPVAAPVMDLEQFEAELDLLLKLDLSLVEGL 248

Query: 237  KQHWLVEREEIEPAVTGSDLHKNSQNALLRRLP-ILDAWAQSETHDLHVPSELEEFTQSG 295
              ++  + +            +  +  L + LP  + A     ++ L      + F    
Sbjct: 249  ADYYRADGQHNSIVGKKWRTEQLMETTLCQNLPDFIKALHTQRSYALFAAHWTDIFKCIT 308

Query: 296  LLAKSKKGNPPQLALFERIE---------------AFLAEPVS-LKTPLLVHAIHHCRHW 339
             LA  K  N     + E  E               A L   +S L T L  +     R  
Sbjct: 309  DLATKKVLNKCSAEVLEYFENHQIIQGLRRFCECVANLKTDLSRLDTYLQFYISQEVRKR 368

Query: 340  LAKAKSTHHWLSFDDLLTQLSAALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFS 399
            L +        +F   +  L+ AL  ++       ++  YP+ ++DEFQDT+  Q ++ +
Sbjct: 369  LPQLLQQRGETTFSQQIRTLAEALQGEQGQRFAVYVQARYPLIVVDEFQDTNQDQDNMLA 428

Query: 400  RLYLDYPQ-----CGLLMIGDPKQAIYAFRGADIFTYIKARNQV----NAHYTLGTNWRS 450
             ++  +PQ     C ++M+GDPKQAIY FRG D+ TYIKAR  V       YTL  N RS
Sbjct: 429  SIWR-HPQRHQHSC-MIMVGDPKQAIYGFRGGDMLTYIKARQDVLIKQGKLYTLRQNHRS 486

Query: 451  SAAMVAAVNQVFSSATHPFIYSDDIPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLD 510
               +V  V+ +F    +   + +++ + P+ A  GA +     + Q +      W +  D
Sbjct: 487  VPELVEVVDALFQREVN---FGEEVIYTPIQA--GARQHPPLTDRQRKNYCPLRWVQLSD 541

Query: 511  KPQSKTDYYAQMAEACAAQIQHILTASASGAATFHRG---EAIEAGDLAVLVRTGNEARM 567
            K +         AE  A +I+ +L    +    F        +   D+A+L +  +    
Sbjct: 542  KNKE--------AEQVAWKIRQLLNHGIAKELLFDESGGQRPLNENDIAILSKNHDGLDK 593

Query: 568  VRDALSQQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTAS 627
             + AL   GI  V   ++ SVF   VA+D+  LL A+  P DE  ++ A+ S L      
Sbjct: 594  AQYALESLGI-RVNRPSKRSVFDCQVARDVGALLTAIMHPYDEGKVKRALLSRLLDFNLQ 652

Query: 628  ELDALNNDENEWEQLIAEFRQYRRLWSERGVLPMLRAVLTQRHIAERW--LAESEGERWL 685
             L  L    +     I +F   R LW ERG L   +  L    + ++   +A  + ER +
Sbjct: 653  SLVELEQRTDGLSSFIHKFDDIRELWLERGFLSAWQYCLQHFQVWQKLVAIASKDNERAV 712

Query: 686  TDYLHISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTI 745
             +  H++E+L Q +      + L  +  + +   ++     + +++R  S    VQ++TI
Sbjct: 713  VNLRHLTEVLSQHSEIYPGAKNLYYWYFKQLQSPSE----REWELERRLSNEAGVQLMTI 768

Query: 746  HKSKGLEYPLVFLPFV-MSYRESSEG-KYYDAESATTWVDLTGNEEALAKAD-------- 795
            H+SKGLE+ +VFL     +++E ++   +   E           +  +A AD        
Sbjct: 769  HQSKGLEFKVVFLLGADKAFKEMNKTLNFSTVEQLNPVTGQLEKQRVIAVADKNLLDENA 828

Query: 796  ----QER-LAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850
                QER  AE+ RL YVALTRA +  +  +         Q+     R ++ F       
Sbjct: 829  VNQHQERAAAENRRLWYVALTRASHRVYAML---------QDTEGKARHSLAFWRNRA-- 877

Query: 851  GGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRW--RV 908
                  +  +   C + P + Q P       A        ++++ + L+    R +    
Sbjct: 878  ------EPFVHPHCMDEPLLEQLP-------AKVSASSVSKQISVQALNLPQQRFYPRAK 924

Query: 909  TSYSGLVMQ-SSHARHDPL-QELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARP 966
            TS+S L     +    DPL  E+   E    +L    +    A + +     NFP G   
Sbjct: 925  TSFSYLAQHLKTRKIFDPLANEVKRPESAEDELHVVDKAYLPATQPLSWIKQNFPMGTVA 984

Query: 967  GTFLHSLFEEVDFQQSAH-----------------SEPNTKIILELMESEQIESEWLPVL 1009
            G FLH +FE +DFQ+ A                  +E   K   +  E  + E   L  L
Sbjct: 985  GNFLHEIFEHIDFQEPADWILEIRRRFKNDYSGLWNELRDKYQRDFPEQAEDEQLLLNWL 1044

Query: 1010 QQLVDTVLSTPLDGKALRLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAG 1069
             + +  VL TPL      L+ +   Q L E  F L +       + RI Q          
Sbjct: 1045 AEWLQQVLGTPLHA-GFELKHLQPEQHLAEFPFCLALSD-HVLAIQRIHQLFAEYGIDMP 1102

Query: 1070 DLGFHAVQGMLKGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQY 1129
            +L        L G IDLV+    +Y++ D+KSN LG+D + Y+   + ++M+   Y LQ 
Sbjct: 1103 ELNPAESARYLNGSIDLVYFDGHQYHIADYKSNFLGNDQSDYNHASIRASMSHSSYWLQA 1162

Query: 1130 QIYALALHRFLRSRLAHYNYEQHFGGVFYLFLRGMDGRGDQGVFHTKPSLALLDELDGLI 1189
             +Y +ALHR+L  ++ +Y   +  GG  YL+LRGM+G+ D G+++ KPS   +  LD L+
Sbjct: 1163 GLYLVALHRYLSIQMQNYEISRDLGGASYLYLRGMNGQPDHGMYYWKPSTEFILRLDALL 1222