Pairwise Alignments

Query, 706 a.a., exodeoxyribonuclease V subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease from Pseudomonas putida KT2440

 Score =  412 bits (1058), Expect = e-119
 Identities = 293/734 (39%), Positives = 398/734 (54%), Gaps = 109/734 (14%)

Query: 7   EVAKRLLAQGALRPLDVQFARFIGKQAVLAGHNAAESELLSVLSAALSA-ELGRGHICLP 65
           ++  R + +G LR LD  F  F+ ++A         S+ L +L+AAL++ +LG GH+CL 
Sbjct: 32  QLLDRWVERGWLRALDRAFVSFLEERA-------PGSDPLLLLAAALASHQLGHGHVCLD 84

Query: 66  LCDAQGNRCDLAALIGLYGEAS----LQHSERWLAVDWQALLQ---ASPLV------GQQ 112
           L        D A  +   G+A     L  S+    +D  A LQ   ASPLV      GQQ
Sbjct: 85  LQQTLAEP-DFALSLPPEGDALIGPLLLPSQLLANLDLNAWLQRISASPLVAAGDTPGQQ 143

Query: 113 GEAVPLMFDGSRLYLHRYWHYEKQLAARLTELAAPQRLSPAELANLRERLNTLFARDYLG 172
             A PL+  G RLYL RYW YE+++                                   
Sbjct: 144 --ARPLVRSGERLYLRRYWSYERRID---------------------------------- 167

Query: 173 LWQALQQKPLSSVERIQLLNDRLDVVESDALDWPAIEAVVEKAQRAADLQALEQLIPLTH 232
                           Q L  RL   E+   D P         +R A L   E   P   
Sbjct: 168 ----------------QALRQRLSQAEAPPADLP---------ERLAQL--FEGGAPAGQ 200

Query: 233 CLNWQKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALISQSMAQGKVPEIKLIAPTGK 292
            ++WQK+A A+A    F++I+GGPGTGKTTTV +LLA L + ++ QG+   I+L APTGK
Sbjct: 201 -VDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQAPAVEQGRPLRIRLAAPTGK 259

Query: 293 AAARLTESMGKAVSQLAIEPEIAAAIPSSSSTIHRLLGAIPGSAEFRHHTRNPLHLDLLV 352
           AAARLTES+G+ V +L +  E+   IP+  ST+HRLLG+ PGS  FRHH  NPL LD+LV
Sbjct: 260 AAARLTESIGQQVERLQVSAEVRGQIPTEVSTVHRLLGSRPGSRHFRHHAGNPLPLDVLV 319

Query: 353 VDEASMVDLPLMVKLVEALPKHARLILLGDKDQLASVEAGAVLGDICTFLNQG-YGHEQG 411
           VDEASM+DL +M  L++ALP  ARL+LLGDKDQLASVEAGAVLGD+C    +G Y     
Sbjct: 320 VDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGAVLGDLCRDAEEGFYSPATA 379

Query: 412 AQLAELTGFATL---RQTASKTVNPVADCLCMLQKSYRFDARSGIGQLAKAINSGSPARV 468
           A L +++G +      +   +  +P+A  + ML+ S RF   SGIGQLA+ +N       
Sbjct: 380 AWLQQVSGESLAGSGLKAGDEQRHPLAQQVVMLRFSRRFGEGSGIGQLARLVNRQDAHAA 439

Query: 469 EAVWQQSFSDIEHFALSGEHYQQLLQTLV----------QAYRPYLSLLN--QPTEQFES 516
             +     +D+   +L  E  +   + L+          Q YR YL  L   +P      
Sbjct: 440 RNLLAAPPADVHSLSLKHEQDRAFDRLLLDGLNRGTDGPQGYRSYLRTLGRYRPALDTAF 499

Query: 517 TQQSMLTLAKSALDAFSRCRLLCALREGDFGVMGLNTRIERALNAHKLIKTQEEIWYHGR 576
              +    A   L +F   +LLCA+R G +GV GLN R+ R L+   LI +Q+  WY GR
Sbjct: 500 DDPAWEQWAGKVLRSFEDFQLLCAVRRGAWGVEGLNERVARVLHNAGLIDSQQP-WYEGR 558

Query: 577 PIMVTRNDHGLGLYNGDIGLCMRDRDD-DQGRLKVYFELPDGS--IKAVLPSRVPQHETA 633
           P++VTRND+GLGL NGDIG+ +R  D+  Q  L+V F   DGS  ++ VLPSR+ + ET 
Sbjct: 559 PVLVTRNDYGLGLMNGDIGIALRLPDEHGQPLLRVAFPRNDGSGGVRFVLPSRLNEVETV 618

Query: 634 YAMTIHKSQGSEFDLTLLILPPDYSPILTRELVYTGITRAKKQLKLYCDNK-VLQRAIKV 692
           +AMT+HKSQGSEF  T L+LP   +P+LT+ELVYTGITRAK    L    + + + A+  
Sbjct: 619 FAMTVHKSQGSEFSHTALVLPEALNPVLTKELVYTGITRAKHCFSLVEPRQGIFEEAVAR 678

Query: 693 KTQRASGLVARLEQ 706
           K +R SGL+  LEQ
Sbjct: 679 KVRRISGLM--LEQ 690