Pairwise Alignments

Query, 706 a.a., exodeoxyribonuclease V subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., RecBCD enzyme subunit RecD from Pseudomonas sp. DMC3

 Score =  414 bits (1063), Expect = e-119
 Identities = 286/732 (39%), Positives = 396/732 (54%), Gaps = 107/732 (14%)

Query: 11  RLLAQGALRPLDVQFARFIGKQAVLAGHNAAESELLSVLSAALSA-ELGRGHICLPLCD- 68
           R + +G LR LD  F  F+ +          E++ L +L+AAL++ +LG GH+CL L + 
Sbjct: 36  RWVERGWLRALDRAFVAFLHELE-------PETDPLVLLAAALTSHQLGHGHVCLDLFET 88

Query: 69  --AQGNRCDLAALIGLYGEASLQHSERWLAVD---WQALLQASPLVG------QQGEAVP 117
             A      L     + G   L  S+    +D   W  +L +SPLV       +  +  P
Sbjct: 89  LKAPDFALSLPPEGDVQGGVLLLPSQLLETLDGAHWCKVLASSPLVALAADPSETAQTRP 148

Query: 118 LMFDGSRLYLHRYWHYEKQLAARLTELAAPQRLSPAELANLRERLNTLFARDYLGLWQAL 177
           L+    RLYL RYW YE+++ A L                 R+RL              +
Sbjct: 149 LVLSSKRLYLRRYWTYERRIDAAL-----------------RQRL--------------M 177

Query: 178 QQKPLSSVERIQLLNDRLDVVESDALDWPAIEAVVEKAQRAADLQALEQLIPLTHCLNWQ 237
           QQ+P    +  Q LN      ES A+                              ++WQ
Sbjct: 178 QQEPTPD-DLPQRLNGLFGGAESAAV------------------------------IDWQ 206

Query: 238 KVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALISQSMAQGKVPEIKLIAPTGKAAARL 297
           K+A A+A    F++I+GGPGTGKTTTV +LLA L + ++  G    I+L APTGKAAARL
Sbjct: 207 KLACALATRSAFSIITGGPGTGKTTTVVRLLALLQAPAVEAGHPLRIRLAAPTGKAAARL 266

Query: 298 TESMGKAVSQLAIEPEIAAAIPSSSSTIHRLLGAIPGSAEFRHHTRNPLHLDLLVVDEAS 357
           TES+ + V  L +   + AAIPS  +T+HRLLG+ PG+  FRHH  N L LD+LVVDEAS
Sbjct: 267 TESISQQVQSLQVAEAVRAAIPSDVTTVHRLLGSRPGTRHFRHHAGNRLPLDVLVVDEAS 326

Query: 358 MVDLPLMVKLVEALPKHARLILLGDKDQLASVEAGAVLGDICTFLNQGYGHEQGAQLAEL 417
           M+DL +M  L++A+P HARL+LLGDKDQLASVEAGAVLGD+C     G+   Q  Q  E 
Sbjct: 327 MIDLEMMANLLDAMPAHARLVLLGDKDQLASVEAGAVLGDLCRDAEGGWYSPQTRQWLES 386

Query: 418 TGFATLRQTASKT----VNPVADCLCMLQKSYRFDARSGIGQLAKAINS--GSPARVEAV 471
               +L+ +         +P+A  + ML+ S RF   SGIGQLA+ +N      AR + +
Sbjct: 387 VSGESLQGSGMHEDRDGTHPLAQQVVMLRHSRRFGEGSGIGQLARRVNQQLADEAR-QLL 445

Query: 472 WQQSFSDIEHFALSGEHYQQLLQTLV-------QAYRPYLSLL--NQPTEQFESTQQSML 522
              S+ D+    L GEH  +L + L+       Q YR YLS+L   +P            
Sbjct: 446 AAGSYDDVYSLPLKGEHDHKLERLLLEGHGNGPQGYRHYLSVLRDQRPPSTRPLEHSDWT 505

Query: 523 TLAKSALDAFSRCRLLCALREGDFGVMGLNTRIERALNAHKLIKTQEEIWYHGRPIMVTR 582
             A+  L AF   +LLCA+R+G +GV GLN RI  AL   +LI++ ++ WY GRP+++TR
Sbjct: 506 DWAREVLQAFDTFQLLCAVRKGPWGVEGLNQRITAALLKARLIESDQQ-WYEGRPVLMTR 564

Query: 583 NDHGLGLYNGDIGLCMRDRDDDQGR-----LKVYFELPD--GSIKAVLPSRVPQHETAYA 635
           ND+GLGL NGDIG+ ++  + +        L+V F   D  G ++ VLPSR+   ET YA
Sbjct: 565 NDYGLGLMNGDIGIALKLPEREGAEIGKTVLRVAFPRNDGEGGVRFVLPSRLNDVETVYA 624

Query: 636 MTIHKSQGSEFDLTLLILPPDYSPILTRELVYTGITRAKKQLKLYCDNK-VLQRAIKVKT 694
           MT+HKSQGSEF  T LILP   +P+LT+EL+YTGITRA+    L      V + A+  K 
Sbjct: 625 MTVHKSQGSEFAHTALILPDALNPVLTKELIYTGITRARYWFTLIEPRAGVFEEAVLRKV 684

Query: 695 QRASGLVARLEQ 706
           +R SGL+  LE+
Sbjct: 685 KRLSGLMLELEE 696