Pairwise Alignments

Query, 706 a.a., exodeoxyribonuclease V subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 611 a.a., Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  496 bits (1277), Expect = e-144
 Identities = 304/704 (43%), Positives = 408/704 (57%), Gaps = 105/704 (14%)

Query: 8   VAKRLLA---QGALRPLDVQFARFIGKQAVLAGHNAAESELLSVLSAALSAELGRGHICL 64
           + +RLL    Q  LRP+D QFA        +AG+   +   +++ +A LS + G GH+CL
Sbjct: 3   IQERLLEAVEQKLLRPIDAQFA------LTVAGN---DDPAVTLAAALLSHDAGEGHVCL 53

Query: 65  PLCDAQGNRCDLAALIGLYGEASLQHSERWLAVDWQALLQASPLVGQQGEAVPLMFDGSR 124
           PL            L+    E +         +DW+  L AS  V       PL+  G R
Sbjct: 54  PLSRLTLTEEAHPLLVACISETATP-------IDWKKRLLASAAVSCGDSPAPLILCGER 106

Query: 125 LYLHRYWHYEKQLAARLTELAAPQRLSPAELANLRERLNTLFARDYLGLWQALQQKPLSS 184
           LYL+R W  E+ +A    E+     +   +L+ +   L+ LF                  
Sbjct: 107 LYLNRMWCNERTVARFFNEVNQAIAVDEDQLSRI---LDALFP----------------- 146

Query: 185 VERIQLLNDRLDVVESDALDWPAIEAVVEKAQRAADLQALEQLIPLTHCLNWQKVAAAVA 244
                          +D ++W  + A V                               A
Sbjct: 147 --------------PTDEVNWQKVAAAV-------------------------------A 161

Query: 245 LTRRFAVISGGPGTGKTTTVTKLLAALISQSMAQGKVPEIKLIAPTGKAAARLTESMGKA 304
           LTRR +VISGGPGTGKTTTV KLLAALI   MA G+   I+L APTGKAAARLTES+G A
Sbjct: 162 LTRRISVISGGPGTGKTTTVAKLLAALI--QMADGERCRIRLAAPTGKAAARLTESLGAA 219

Query: 305 VSQLAIEPEIAAAIPSSSSTIHRLLGAIPGSAEFRHHTRNPLHLDLLVVDEASMVDLPLM 364
           + QL +       IP  +ST+HRLLGA PGS   RHH  NPLHLD+LVVDEASM+DLP+M
Sbjct: 220 LRQLPLTDAQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279

Query: 365 VKLVEALPKHARLILLGDKDQLASVEAGAVLGDICTFLNQGYGHEQGAQLAELTGFATLR 424
            +L+++LP H R+I LGD+DQLASVEAGAVLGDIC ++N G+  E+  QL+ LTG A + 
Sbjct: 280 SRLIDSLPPHGRVIFLGDRDQLASVEAGAVLGDICAYVNAGFTAERARQLSRLTGSA-IP 338

Query: 425 QTASKTVNPVADCLCMLQKSYRFDARSGIGQLAKAINSGSPARVEAVWQQSFSDIEHFAL 484
             A      + D LC+LQKSYRF + SGIG+LA AIN G  + ++AV+QQ FSDIE   L
Sbjct: 339 AGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAAINCGDRSAIQAVFQQGFSDIEKRTL 398

Query: 485 -SGEHYQQLLQTLVQAYRPYLSLLNQPTEQFESTQQSMLTLAKSALDAFSRCRLLCALRE 543
            S + Y  +L   +  Y  YL LL++     ++T +++       L AF+  +LLCALRE
Sbjct: 399 QSSDDYAGMLDEALAGYGRYLRLLHE-----KATPEAI-------LQAFNEYQLLCALRE 446

Query: 544 GDFGVMGLNTRIERAL-NAHKLIKTQEEIWYHGRPIMVTRNDHGLGLYNGDIGLCMRDRD 602
           G FGV GLN RIE+A+    K+ +     WY GRP+M+ RND  LGL+NGDIG+ +   D
Sbjct: 447 GPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---D 503

Query: 603 DDQGRLKVYFELPDGSIKAVLPSRVPQHETAYAMTIHKSQGSEFDLTLLILPPDYSPILT 662
             QG L+V+F +PDG+IK+V PSR+P+H+T +AMT+HKSQGSEFD   LILP   SP++T
Sbjct: 504 RGQG-LRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEFDHAALILPSQRSPVVT 562

Query: 663 RELVYTGITRAKKQLKLYCDNKVLQRAIKVKTQRASGLVARLEQ 706
           RELVYT +TRA+++L LY D ++L  AI  +T+R SGL    ++
Sbjct: 563 RELVYTAVTRARRRLSLYADERILAGAIVTRTERRSGLATLFDE 606