Pairwise Alignments

Query, 706 a.a., exodeoxyribonuclease V subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 608 a.a., exonuclease V (RecBCD complex), alpha chain from Escherichia coli BL21

 Score =  512 bits (1318), Expect = e-149
 Identities = 310/690 (44%), Positives = 399/690 (57%), Gaps = 108/690 (15%)

Query: 18  LRPLDVQFARFIGKQAVLAGHNAAESELLSVLSAALSAELGRGHICLPLCDAQGNRCD-- 75
           LRPLDVQFA        +AG    E   +++ +A LS + G GH+CLPL   + N     
Sbjct: 16  LRPLDVQFA------LTVAGD---EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHP 66

Query: 76  -LAALIGLYGEASLQHSERWLAVDWQALLQASPLVGQQGEAVPLMFDGSRLYLHRYWHYE 134
            LA  +   GE            +W+  L AS  V +  E  P++  G RLYL+R W  E
Sbjct: 67  LLATCVSEIGELQ----------NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116

Query: 135 KQLAARLTELAAPQRLSPAELANLRERLNTLFARDYLGLWQALQQKPLSSVERIQLLNDR 194
           + +A    E+     +  A LA   ++L  +                             
Sbjct: 117 RTVARFFNEVNHAIEVDEALLAQTLDKLFPV----------------------------- 147

Query: 195 LDVVESDALDWPAIEAVVEKAQRAADLQALEQLIPLTHCLNWQKVAAAVALTRRFAVISG 254
                SD ++W  + A                               AVALTRR +VISG
Sbjct: 148 -----SDEINWQKVAA-------------------------------AVALTRRISVISG 171

Query: 255 GPGTGKTTTVTKLLAALISQSMAQGKVPEIKLIAPTGKAAARLTESMGKAVSQLAIEPEI 314
           GPGTGKTTTV KLLAALI   MA G+   I+L APTGKAAARLTES+GKA+ QL +  E 
Sbjct: 172 GPGTGKTTTVAKLLAALI--QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLSDEQ 229

Query: 315 AAAIPSSSSTIHRLLGAIPGSAEFRHHTRNPLHLDLLVVDEASMVDLPLMVKLVEALPKH 374
              IP  +ST+HRLLGA PGS   RHH  NPLHLD+LVVDEASM+DLP+M +L++ALP H
Sbjct: 230 KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289

Query: 375 ARLILLGDKDQLASVEAGAVLGDICTFLNQGYGHEQGAQLAELTGFATLRQTASKTVNPV 434
           AR+I LGD+DQLASVEAGAVLGDIC + N G+  E+  QL+ LTG      T ++  + +
Sbjct: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAAS-L 348

Query: 435 ADCLCMLQKSYRFDARSGIGQLAKAINSGSPARVEAVWQQSFSDIEHFAL-SGEHYQQLL 493
            D LC+LQKSYRF + SGIGQLA AIN G    V+ V+QQ F+DIE   L SGE Y  +L
Sbjct: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML 408

Query: 494 QTLVQAYRPYLSLLNQPTEQFESTQQSMLTLAKSALDAFSRCRLLCALREGDFGVMGLNT 553
           +  +  Y  YL LL    E                + AF+  +LLCALREG FGV GLN 
Sbjct: 409 EEALAGYGRYLDLLQARAE------------PDLIIQAFNEYQLLCALREGPFGVAGLNE 456

Query: 554 RIERAL-NAHKLIKTQEEIWYHGRPIMVTRNDHGLGLYNGDIGLCMRDRDDDQGRLKVYF 612
           RIE+ +    K+ +     WY GRP+M+ RND  LGL+NGDIG+ +   D  QG  +V+F
Sbjct: 457 RIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---DRGQG-TRVWF 512

Query: 613 ELPDGSIKAVLPSRVPQHETAYAMTIHKSQGSEFDLTLLILPPDYSPILTRELVYTGITR 672
            +PDG+IK+V PSR+P+HET +AMT+HKSQGSEFD   LILP   +P++TRELVYT +TR
Sbjct: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572

Query: 673 AKKQLKLYCDNKVLQRAIKVKTQRASGLVA 702
           A+++L LY D ++L  AI  +T+R SGL A
Sbjct: 573 ARRRLSLYADERILSAAIATRTERRSGLAA 602