Pairwise Alignments

Query, 266 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., ion channel protein Tsx from Pseudomonas simiae WCS417

 Score =  102 bits (253), Expect = 1e-26
 Identities = 88/315 (27%), Positives = 137/315 (43%), Gaps = 65/315 (20%)

Query: 4   SLLALSLLAATSAPVLAA-----DYSDGD------------IHKNDYKWMQFNLMGAFDE 46
           SLL  ++    SAP+LA      D + G+            ++ +D+      L+G+ D 
Sbjct: 14  SLLLAAVTGVLSAPILAQAKPIDDSAQGETLSPEASPAKKGVYLSDWFNQDLTLIGSKDI 73

Query: 47  LPGKSSHD--YLEMEFGGRSGIFDLYGYVDVFNLAT-NKSSDK----VGDPKIFMKFAPR 99
             G    D  YLE E+ GR G F+LYGY+DV  + T   S+DK     G P +FM+  PR
Sbjct: 74  SFGPKPQDDIYLEYEYFGRKGPFELYGYIDVPKILTIGNSNDKGVWDHGSP-VFMEHEPR 132

Query: 100 MSLDAFTGVDMSFGPVQEVYVASLFEWDGTDFKTNAFSVNNQKIGLGSDVMVPWFGKVGL 159
           +S+D   G  ++ GP +E YVA  F+W            N    GLG+D+       +  
Sbjct: 133 ISIDYLAGRSLAIGPFKEWYVA--FDWIYDHGSRKENRANTLYSGLGTDIDTHSRVNLSA 190

Query: 160 NLYGTYD------GNRKDWNGFQISTNWFKPFYFFENGSFISYQGYIDYQFGL---KDEY 210
           N YG Y        N   W+G++    +  P   F+NG+ ++Y G+ +Y FG    KD  
Sbjct: 191 NFYGRYQWENYGASNEYSWDGYRAQMKYIVPIGKFDNGASLTYIGFTNYDFGSDLHKDNP 250

Query: 211 STASNGGAMFN--------------GIYWHS-----DRFAVGYGLKGYKDVYGIKDTDGF 251
           +  +N     N              G Y+H+     D   + +G   ++           
Sbjct: 251 ARTANSLVATNVLLYSFTHLRFTLVGRYFHNGGNWEDGSELNFGEGNFR----------A 300

Query: 252 KSTGFGHYVAVTYKF 266
           +S G+G+Y  V Y+F
Sbjct: 301 RSDGWGYYAGVGYQF 315