Pairwise Alignments

Query, 266 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., nucleoside-specific channel-forming protein Tsx from Serratia liquefaciens MT49

 Score = 99.8 bits (247), Expect = 6e-26
 Identities = 87/300 (29%), Positives = 136/300 (45%), Gaps = 43/300 (14%)

Query: 1   MRKSLLALSLLAATSAPVLAADYSDGDIHKNDYKWMQFNLMGAFDELPGKSSHD--YLEM 58
           M+K  LA  +L A S    +   S    + +D+     N++G++    G   ++  YLE 
Sbjct: 1   MKKIALAAGVLLAASYSASSMADSKDSQYVSDWWHQSVNVVGSYHTRFGPQLNNDLYLEY 60

Query: 59  EFGGRSGIFDLYGYVDV---FNLATNKSS---DKVGDPKIFMKFAPRMSLDAFTGVDMSF 112
           E   +   FD YGY+DV   F +         DK G P +FM+  PR S+D  TG D+SF
Sbjct: 61  EAFAKKDWFDFYGYIDVPKFFGVGNTPDRGIWDK-GSP-MFMEIEPRFSIDKLTGTDLSF 118

Query: 113 GPVQEVYVASLFEWD---GTDFKTNAFSVNNQKIGLGSDVMVPWFGKVGLNLYGTYD--- 166
           GP +E Y A+ + +D     D + N +      +GLG+D+       + +N+Y  Y    
Sbjct: 119 GPFKEWYFANNYIYDLGHNADGRQNTW-----YMGLGTDIDTGLPMSLSMNIYAKYQWEN 173

Query: 167 ---GNRKDWNGFQISTNWFKPFYFFENGSFISYQGYIDYQFGL---KDEY---------- 210
               N   W+G++    +F P      G+ +SY G+ ++ FG    KD++          
Sbjct: 174 YQAANENSWDGYRFKVKYFVPLTQVWGGN-LSYIGFTNFDFGSDLGKDDFTVNGRQARTS 232

Query: 211 -STASNGGAMFNGIYWHSDRFAVGYGLKG--YKDVYGIKDTDG-FKSTGFGHYVAVTYKF 266
            S AS+     N  +WH   F   Y   G  ++D   I    G  KSTG+G+Y+   Y F
Sbjct: 233 NSIASSHILALNYDHWHYS-FVARYFHNGGQWQDGVDIGTPQGPIKSTGWGYYIVAGYNF 291