Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 193 a.a., ECF RNA polymerase sigma factor RpoE from Xanthobacter sp. DMC5

 Score =  114 bits (285), Expect = 1e-30
 Identities = 63/170 (37%), Positives = 102/170 (60%), Gaps = 12/170 (7%)

Query: 25  DTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIY 84
           D +AF  +F +++P++K +++++  S   A EL QET+ TVW+KA+ FD  +++ +TWI+
Sbjct: 29  DREAFGRLFRHFAPRVKSYLVRNGLSANAAEELAQETLLTVWRKAAYFDPTRAAASTWIF 88

Query: 85  TIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLL----KEQVMKFLD 140
           TIARNLS DL RR++  D Y        +     D VD  + E  L+    + +V   L 
Sbjct: 89  TIARNLSIDLKRRERYGDTY--------QAEAHEDEVDETSGETILMTAEREARVRAALA 140

Query: 141 RLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMD 190
           +L E Q  +++  + +E P   +A  L IPLGT KSR+RLA+ +LR  ++
Sbjct: 141 KLSEEQATIVRLSFFQEKPHSQIAQELGIPLGTAKSRVRLALNRLRALLE 190