Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

 Score = 62.8 bits (151), Expect = 4e-15
 Identities = 49/185 (26%), Positives = 97/185 (52%), Gaps = 15/185 (8%)

Query: 11  RQEWLECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKAS 70
           ++E  + +E+V+  D +AF L+   Y  K+   +++ V     A ++ QE     ++   
Sbjct: 4   QEEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALG 63

Query: 71  LFDGQKSSLATWIYTIARNLSYDLL--RRQKGRDAYVLADD--IWPEDYCPPDLVDHYAP 126
            F G  S+  TW+Y IA N + + L  R ++  D+ V ++D   +  D+    L D  +P
Sbjct: 64  NFRGD-SAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDH---GLKDLESP 119

Query: 127 EQDLLKEQ----VMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRL---R 179
           E+ LL+++    V + + +LPE  +  +     + +  +D+A ++  P+GTV+SR+   R
Sbjct: 120 ERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAR 179

Query: 180 LAVEK 184
            A++K
Sbjct: 180 EAIDK 184