Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 173 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 63.9 bits (154), Expect = 2e-15
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 38  PKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIYTIARNLSYDLLRR 97
           P L ++  +  G+E  A +LVQ+ +   +  A  +   +  L  W+++I  N+     RR
Sbjct: 13  PALMRYARRLTGNESDAEDLVQDALVRAYANADSYQRGRP-LRVWLFSILHNVFVSGTRR 71

Query: 98  QKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEE 157
              R+ +        E    P      A EQ +   Q+   L  LPE QQ V+  V +E 
Sbjct: 72  AAVRERFRADAVAQAEPVAAP------AQEQMVRLHQIEAALTALPEEQQTVLHLVAVEG 125

Query: 158 IPQQDVADMLDIPLGTVKSRLRLAVEKLR 186
           +  QD AD + IP+GT+ SRL  A  KLR
Sbjct: 126 LSYQDAADAIGIPIGTLISRLSRARAKLR 154