Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., RNA polymerase sigma-70 factor from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 64.7 bits (156), Expect = 1e-15
 Identities = 43/169 (25%), Positives = 86/169 (50%), Gaps = 7/169 (4%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           + ++K    +A+  +F  +  +L  F ++ V  +++A E+V E+M  +W+K   FD    
Sbjct: 6   ISELKEGSEKAYDALFHKFYGRLCGFAIRFVRDQEIAEEIVAESMVVLWEKRHKFDNM-L 64

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMK 137
           +L +++Y   RN S D L++     +  + D +           D Y  E++ +   + +
Sbjct: 65  ALKSYLYNTVRNASLDYLKKSGRHTSLDMLDGME-----AVVAADFYIVEEE-VHATLYQ 118

Query: 138 FLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLR 186
            L+ LP   ++V +   +EE+   ++AD + I L TVKS+   A++ LR
Sbjct: 119 ALEALPAKCRRVFELSCIEELKYSEIADDMGISLNTVKSQRARAIQLLR 167