Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 185 a.a., RNA polymerase subunit sigma-70 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 89.7 bits (221), Expect = 3e-23
 Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 9/185 (4%)

Query: 1   MFNPSPHTFGRQEWLECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQE 60
           M    PHT   +E    + +++S DT+A +L++  YS  L   V++ V  E+ A +++QE
Sbjct: 1   MSTQKPHTITEEE---LVARLRSGDTKAVSLLYDMYSATLFGVVLQIVKVEETAEDVLQE 57

Query: 61  TMSTVWQKASLFDGQKSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDL 120
               +W     +D  K  L TW+  I RNL+ D +R ++ R +  L     P        
Sbjct: 58  AFVKIWNSFQSYDASKGRLFTWMINICRNLAIDKIRSKQHRVS--LQTREIPASPRADMG 115

Query: 121 VDHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRL 180
            D++ PE   L+E      + L   Q+Q+I  +Y E + Q ++A+   IPLGTVK+R R 
Sbjct: 116 ADNFKPEHIGLRE----ITETLSPEQKQIIDLMYFEGMTQSEIAEEYQIPLGTVKTRARS 171

Query: 181 AVEKL 185
           A+  L
Sbjct: 172 AIRTL 176