Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 202 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 63.9 bits (154), Expect = 2e-15
 Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 7/171 (4%)

Query: 21  VKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLA 80
           V+  D +A+A + S Y   +   V+K V +   A +L  E  +  ++    F+ + +  +
Sbjct: 22  VEENDEKAYAELMSIYKKPVYHVVLKMVRNADDAEDLTIEAFAKAFKNLHKFNPEYA-FS 80

Query: 81  TWIYTIARNLSYDLLRRQKGRDAYV-LADDIWPEDYCPPDLVD-HYAPEQDLLKEQVMKF 138
           TW++ IA N   D +R+ + +   +  A  I   D    D  D +  P+++ +K Q ++ 
Sbjct: 81  TWLFRIATNNCIDFIRKNRIKTMSIDSAIKIDNGDEITIDFKDKNLNPQEEAIKNQKIEI 140

Query: 139 LD----RLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
           +     +LPE  Q+++   Y  E+  +++A  L+ PLGTVK++L  A E L
Sbjct: 141 MQYVVAKLPEKYQRLVTLRYFNELSYEEIATELNAPLGTVKAQLHRARELL 191