Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 167 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 75.9 bits (185), Expect = 4e-19
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 9/156 (5%)

Query: 38  PKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIYTIARNLSYDLLRR 97
           P+L+++    V +   A +LVQ+T+   W K++L+ G  + +  W+++I  NL  D +RR
Sbjct: 12  PRLRRYSRALVNNRDDADDLVQDTLERAWAKSNLWGGV-ADMRAWLFSIMHNLHVDGVRR 70

Query: 98  QKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDRLPEAQQQVIKAVYLEE 157
            +     V  DD  PE    P   D  A    +L  Q    LD LP  Q++V+  V LE+
Sbjct: 71  PRLHT--VTMDDDTPEVPVAPTQTDRLA----VLDLQAA--LDLLPVEQKEVLLLVTLED 122

Query: 158 IPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAES 193
           +   DVA  L IP+GTV SRL    E+LR  M+  +
Sbjct: 123 MAYADVAQALGIPIGTVMSRLSRGRERLRGLMEGRA 158