Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 64.3 bits (155), Expect = 1e-15
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           +E+V+  D +AF L+   Y  K+   V ++V S  V  ++VQE+    ++    F G  S
Sbjct: 11  VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQESFIKAYRALDSFRGD-S 68

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYA-PEQDLLKEQ-- 134
           +  TW+Y IA N + + L  Q  R      D I  E++     +   + PE  +L E+  
Sbjct: 69  AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELR 128

Query: 135 --VMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
             V + ++ LPE  +  I    L+ +  +++A ++D P+GTV+SR+  A E +
Sbjct: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181