Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., RNA polymerase, sigma-24 subunit, RpoE from Kangiella aquimarina DSM 16071

 Score = 68.2 bits (165), Expect = 9e-17
 Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 6/168 (3%)

Query: 16  ECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQ 75
           E +++V+  D +AF ++   Y  K+   + ++V       ++ QE     ++    F G 
Sbjct: 9   ELVKRVQEGDKRAFDMLVKKYQHKIMNLISRYVRDSHEVADISQEAFIKAYRALPGFRGD 68

Query: 76  KSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPD-LVDHYAPEQDLLKEQ 134
            S+  TW+Y IA N + + L  Q  R      D +  E Y   D L D  +PE+ + +++
Sbjct: 69  -SAFYTWLYRIAINTAKNYLVSQGRRPPGSDIDSVEAEQYEGGDALRDTGSPERIMFRDE 127

Query: 135 V----MKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRL 178
           +     K +D LPE  +  I    ++ +  +++A+++D P+GTV+SR+
Sbjct: 128 IRNIIFKTIDELPEDLKTAITLREMDGLSYEEIAEVMDCPVGTVRSRI 175