Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., RNA polymerase sigma factor, sigma-70 family from Kangiella aquimarina DSM 16071

 Score = 63.9 bits (154), Expect = 2e-15
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 10/174 (5%)

Query: 15  LECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDG 74
           L  +  +     QAF  ++   S KL     K +G + +A E++QE    VW    ++  
Sbjct: 12  LAWLNDISMGSRQAFQSLYENSSGKLLAIATKLLGRKDLAEEVLQEVYIKVWHNPEVYHS 71

Query: 75  QKSSLATWIYTIARNLSYDLLRRQ--KGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLK 132
            + S+ TW+ +I RN   D LR    K +  + + +   P D  P   +D  A  Q L  
Sbjct: 72  DRGSVMTWLISIMRNQCIDQLRHSQVKRKHQHKMPE---PTDINPQIDLDMNASNQKL-- 126

Query: 133 EQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLR 186
           ++ M+    L   Q+  I+  +L     Q++   L  PLG++KS +R  +E L+
Sbjct: 127 DECMRL---LKGEQRHTIQLAFLYGYTHQEITRHLSAPLGSIKSWIRRGLEALK 177