Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., RNA polymerase sigma factor, sigma-70 family from Kangiella aquimarina DSM 16071

 Score = 64.3 bits (155), Expect = 2e-15
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 27  QAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWIYTI 86
           +AF  ++  +   L ++ ++ V S   A EL QET  +V + +  +    +   TW+Y +
Sbjct: 59  RAFEQLYQRHKNPLLRYFLRQVDSRATAEELFQETWQSVIKASDRYQAS-AKFTTWLYHM 117

Query: 87  ARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDL----LKEQVMKFLDRL 142
           ARN   D  R+Q GR   +  DD   +    P       PEQ L     K+Q +  L +L
Sbjct: 118 ARNKLIDHYRKQ-GRGEELSLDD---QVELQPAAHSVDEPEQQLNDAQSKQQYLWALAQL 173

Query: 143 PEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLR 186
           P AQ++V+       +  Q++A+ +      VKSRLR AV+KL+
Sbjct: 174 PPAQREVLVLKIESAMTVQEIAETIQDNAEAVKSRLRYAVQKLK 217