Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Erwinia tracheiphila SCR3

 Score = 63.9 bits (154), Expect = 2e-15
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           +E+V+  D ++F L+   Y  K+   V ++V S  V  ++VQE+    ++    F G  S
Sbjct: 11  VERVQKGDQKSFNLLVVRYQHKVASLVSRYVPSGDVP-DIVQESFIKAYRALESFRGD-S 68

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDL-----LK 132
           +  TW+Y IA N + + L  Q  R      D I  E++     +   +  ++L     LK
Sbjct: 69  AFYTWLYRIAVNTAKNHLVAQGRRPPLSDVDAIDAENFESAGGLKEISNPENLMLSEELK 128

Query: 133 EQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
           + V + ++ LPE  +  I    L+ +  +++A ++D P+GTV+SR+  A E +
Sbjct: 129 QMVFRTIETLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181