Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Enterobacter asburiae PDN3

 Score = 63.9 bits (154), Expect = 2e-15
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           +E+V+  D +AF L+   Y  K+   V ++V S  V  ++VQE+    ++    F G  S
Sbjct: 11  VERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVP-DVVQESFIKAYRALDSFRGD-S 68

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYA-PEQDLLKEQ-- 134
           +  TW+Y IA N + + L  Q  R      D I  E++     +   + PE  +L E+  
Sbjct: 69  AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIDAENFESGGALKEISNPENLMLSEELR 128

Query: 135 --VMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
             V + ++ LPE  +  I    L+ +  +++A ++D P+GTV+SR+  A E +
Sbjct: 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181