Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Dickeya dianthicola ME23

 Score = 61.2 bits (147), Expect = 1e-14
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 7/173 (4%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           +E+V+  D +AF L+   Y  K+   V ++V +  V  ++VQE+    ++    F G+ S
Sbjct: 11  VERVQKGDRKAFNLLVVRYQHKVASLVSRYVPAGDVP-DVVQESFIKAYRALESFRGE-S 68

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYA-PEQDLLKEQVM 136
           +  TW+Y IA N + + L  Q  R      D    E+Y     +   + PE  +L E++ 
Sbjct: 69  AFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDANDAENYENASALKEISNPENLMLSEELR 128

Query: 137 KF----LDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
           +     ++ LPE  +  I    L+ +  +++A ++D P+GTV+SR+  A E +
Sbjct: 129 RIVFHTIESLPEDLRLAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 181