Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 203 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 67.4 bits (163), Expect = 2e-16
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 21/180 (11%)

Query: 19  EKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSS 78
           + V  +D QA+A +   Y   +   ++K +     A +L  E  +  ++    F  +  +
Sbjct: 21  QAVDQKDQQAYATLMKRYKKAVYFMILKMIRDADDAEDLTMEAFAKAFRNLHKFK-KDYT 79

Query: 79  LATWIYTIARNLSYDLLRRQKGRDAYV---LADD------IWPEDYCPPDLVDHYAPEQD 129
            +TW++ IA N + D +R++K +   +   L DD      I  ED       D   P+ +
Sbjct: 80  FSTWLFRIATNNTIDFIRKKKLKTMSLNNTLTDDGGNSVNIDVED-------DDNNPQDE 132

Query: 130 LLKEQ----VMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKL 185
            +K Q    V  F+D+LP   ++++K  Y +E+   ++A  LD PLGTVK++L  + E L
Sbjct: 133 FIKSQRIEMVRIFVDKLPAKYRKLVKLRYFDELSYDEIAQELDKPLGTVKAQLHRSRELL 192