Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 205 a.a., RNA polymerase sigma factor from Caulobacter crescentus NA1000 Δfur

 Score =  103 bits (257), Expect = 2e-27
 Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 7/173 (4%)

Query: 22  KSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLAT 81
           +S+D  AFA +F++Y+P++K  +++   +   A EL QE M  VW+KA  FD +++S A 
Sbjct: 35  QSQDRAAFAELFAHYAPRVKTLLVRSGSTPSAAEELAQEVMLAVWRKAHYFDPKRASAAA 94

Query: 82  WIYTIARNLSYDLLRRQKGRDAYVLAD-DIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLD 140
           WI+TIARNL  D LRR  G  A    D ++  E+   PD +   +  QD   + V   + 
Sbjct: 95  WIFTIARNLRIDSLRR--GSSALYAVDLNLGAEEPPQPDAI--LSGMQD--AQIVRSAMQ 148

Query: 141 RLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMDAES 193
            L   Q Q I+  + +E     +++ L +PLGTVK+R+R  + KLR  ++ E+
Sbjct: 149 TLNPDQSQAIEMAFFQEQTHSQISEALGVPLGTVKARIRFGMMKLRAFIEREA 201