Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., sigma-70 family RNA polymerase sigma factor from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  107 bits (266), Expect = 2e-28
 Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 5/164 (3%)

Query: 24  RDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSLATWI 83
           RD +AFA +F+Y++P+LK +++K   +   A +  Q+ M TVW+KA LFD  K+  ATWI
Sbjct: 18  RDREAFAALFAYFAPRLKAWLIKSGATPGAAEDFAQDAMLTVWRKADLFDSSKARAATWI 77

Query: 84  YTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFLDRLP 143
           +TIARN   D+LRR   R       ++  +D   PD +   + + D +++     L RL 
Sbjct: 78  FTIARNRRLDMLRRD-ARPLPTPEIELAGDDVRRPDELLSMSQDADRVRDA----LARLS 132

Query: 144 EAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRL 187
               +V++  +  +    ++A  L +PLGTVKSR+R A+ KLRL
Sbjct: 133 ADHVEVLRLAFFMDNSHSEIAKHLGLPLGTVKSRIRNAMTKLRL 176