Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., Sigma-W factor from Alteromonas macleodii MIT1002

 Score = 65.1 bits (157), Expect = 8e-16
 Identities = 43/180 (23%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 9   FGRQEWLECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQK 68
           FG +   E + K K  D QAF  ++  +  ++     +  G + +A +  QE    +W+K
Sbjct: 15  FGNKSENELISKAKKGDKQAFRSLYDEHIGRVYALCYRLTGEKGMAEDASQEVFIQLWKK 74

Query: 69  ASLFDGQKSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDY--CPPDLVDHYAP 126
            + FDGQ S  +TW++++  N++   +R+QKG          W +         ++    
Sbjct: 75  LANFDGQ-SQFSTWLHSVTANITISYMRKQKG----------WVQRMFNLENSGINEMPA 123

Query: 127 EQDLLKEQVMKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLR 186
           E++     +   + RLPE  + V     +E    +D+A ML++ +G+ K++   A + L+
Sbjct: 124 EENSTDVDLEALVIRLPERARMVFVLHAIEGYRHEDIASMLNMAVGSSKAQFFRAKQLLK 183