Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 177 a.a., Sigma-K factor from Alteromonas macleodii MIT1002

 Score = 71.2 bits (173), Expect = 1e-17
 Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 20  KVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKSSL 79
           K    D +AFA ++   SP+L    ++ +   ++A E  Q+    +W  A  +   K ++
Sbjct: 12  KTADGDKKAFAELYKITSPQLYAVALRLLKRPELADEATQDAYIKIWHNAGNYQRGKGTV 71

Query: 80  ATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYAPEQDLLKEQVMKFL 139
            TW+ +IAR  + DL+R    R+   L DD       P  +    + + +  + ++   L
Sbjct: 72  LTWMVSIARYRALDLIRYHNVRNEVELNDD------APSGMETTQSIKLEAEQAKLASCL 125

Query: 140 DRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLR 186
           D L   Q+Q I   Y+  +  Q+V   L  PLGT+KS +R  ++ L+
Sbjct: 126 DELDGPQRQAIHLAYVNGMSHQEVVTHLASPLGTIKSWIRRGLQSLQ 172