Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., Sigma-24 from Alteromonas macleodii MIT1002

 Score = 65.5 bits (158), Expect = 6e-16
 Identities = 48/178 (26%), Positives = 90/178 (50%), Gaps = 9/178 (5%)

Query: 16  ECMEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQ 75
           + +EKV+  D  AF L+ + Y  K+   V ++V +     ++ QE     ++    F G 
Sbjct: 9   QLVEKVQRGDKNAFNLLVTRYQHKVMHLVSRYVKNTGDVADVTQEAFIKAYRALPNFRGD 68

Query: 76  KSSLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPD-LVDHYAPEQDLLKEQ 134
            S+  TW+Y IA N + + L  Q  +      D    + Y   D L +   PE+ LL E+
Sbjct: 69  -SAFYTWLYRIAVNSAKNYLVSQGRKPPASDVDADEADFYEGSDALKEQSTPERSLLSEE 127

Query: 135 V----MKFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRL---RLAVEKL 185
           +     K +++LP+  +  I    +E +  +++A+++  P+GTV+SR+   R A++K+
Sbjct: 128 IEETLFKVVEKLPDDLRMAITLREIEGLSYEEIANVMSCPVGTVRSRIFRAREAIDKV 185