Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 176 a.a., Sigma-W factor from Alteromonas macleodii MIT1002

 Score = 61.6 bits (148), Expect = 8e-15
 Identities = 45/174 (25%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           +E+    + +A+  + S Y   + Q+ ++  G+   A +L+QE   +V++  + F G+  
Sbjct: 10  VEQALRGNKKAWFTLISRYETAMYQYGIRMTGNSHDAADLMQEIFISVFRSLACFKGE-G 68

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIW-PEDYCPPDLVDHYAPEQDLLKEQVM 136
           S  +W+Y IA     +L R++K        DDI  P    P   +  Y+  +     Q M
Sbjct: 69  SFKSWLYRIAHCRCVELYRKRKPHSDI---DDIQAPLCGAPCPEMQLYSDRESRALTQAM 125

Query: 137 KFLDRLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSMD 190
           +    LP  Q+ V++  +      +++A  +DI + T KSRL  A+ KL+L ++
Sbjct: 126 Q---TLPLCQKAVVELKFFGHFTFEEIAQQMDISVNTAKSRLYAALAKLKLELE 176