Pairwise Alignments

Query, 194 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., sigma factor from Agrobacterium fabrum C58

 Score = 73.9 bits (180), Expect = 2e-18
 Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 15/178 (8%)

Query: 18  MEKVKSRDTQAFALVFSYYSPKLKQFVMKHVGSEQVALELVQETMSTVWQKASLFDGQKS 77
           + +V   D  AF  ++   SPKL    +K +     A E +QE    VWQ+A  F     
Sbjct: 10  INRVGMGDRSAFVSLYQATSPKLFAICLKILRDRTEAEEALQEIYIKVWQRARTFAVSAG 69

Query: 78  SLATWIYTIARNLSYDLLRRQKGRDAYVLADDIWPEDYCPPDLVDHYA--PEQDLLKEQV 135
             ATW+ TIARN + D +R +K       +DDI  E Y   DLVD     PEQ ++    
Sbjct: 70  KPATWLATIARNHAIDTIRARK-----PASDDI-DEAY---DLVDESIRDPEQQVVLVDE 120

Query: 136 MKFLD----RLPEAQQQVIKAVYLEEIPQQDVADMLDIPLGTVKSRLRLAVEKLRLSM 189
            + +D     L     Q ++  Y+E +   +++D L +PL TV++ LR ++ KLR  M
Sbjct: 121 GRRIDDCMRELETVHAQAVRRAYVEGLSYLELSDELRVPLNTVRTWLRRSLLKLRECM 178