Pairwise Alignments

Query, 415 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., electron transport complex protein RnfD (NCBI) from Escherichia coli BW25113

 Score =  111 bits (278), Expect = 3e-29
 Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 48/293 (16%)

Query: 144 EVLFCMVRKHEV-----NEGFFVTSILFALIVPPTLPLWQAALGITFGVVVAKEVFGGTG 198
           E L   +RK  V     +    +T +L A+ +PP  P W   LG  F V++AK+++GG G
Sbjct: 58  EALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLG 117

Query: 199 RNFLNPALAGRAFLFFAYPAQIS------------------------------GDL--VW 226
           +N  NPA+ G   L  ++P Q++                              GD+  + 
Sbjct: 118 QNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLR 177

Query: 227 TAADGYSGATALSQWAQG-GAGALINNATGQTITWMDAFIGNIPGSIGEVSTLALMIGAA 285
              DG S AT L  +     AG  +     + I     + G + G+  +   LA + G  
Sbjct: 178 LGIDGISQATPLDTFKTSVRAGHSV-----EQIMQYPIYSGILAGAGWQWVNLAWLAGGV 232

Query: 286 FIVYMGIASWRIIGGVMIGMILLSTLFNVIGSDTNAMFNMPWHWHLVLGGFAFGMFFMAT 345
           ++++     W I    ++ + L + L  +   +T A   +    HL+ G    G FF+ T
Sbjct: 233 WLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQI----HLLSGATMLGAFFILT 288

Query: 346 DPVSASFTNSGKWAYGILIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDH 398
           DPV+AS TN G+  +G L G++  LIR     YP+G+  A+L AN+  PL D+
Sbjct: 289 DPVTASTTNRGRLIFGALAGLLVWLIRSFG-GYPDGVAFAVLLANITVPLIDY 340