Pairwise Alignments

Query, 408 a.a., NADH:ubiquinone reductase (Na(+)-transporting) subunit F from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., hypothetical protein from Pseudomonas simiae WCS417

 Score = 47.0 bits (110), Expect = 8e-10
 Identities = 55/258 (21%), Positives = 98/258 (37%), Gaps = 69/258 (26%)

Query: 52  GGKLLTALAGAGVFVSSACGGGGSCGQCRVKIKSGGGDILPTELDHISKGEAREGERLAC 111
           G  LL AL  AG  V  +C  G SC  C V+ +   G++   + + +S  + ++G RLAC
Sbjct: 16  GSNLLDALNQAGAAVPYSCRAG-SCHACLVRCE---GEVEDKQPEALSPAQRQDGWRLAC 71

Query: 112 QVAVKADMDLE--------LPEEIFGVKKWECTVISNDNKATFIKELKLAIPDGESVPFR 163
           Q  V+ D+ +E        LP ++ GV      V            L+L +     + +R
Sbjct: 72  QCQVRGDLRVETFDPTRDGLPAQVVGVDWLSPNV------------LRLRLQPERGLRYR 119

Query: 164 AGGYIQIEAPAHHVKYADFDVPEKYRGDWDKFNLFRYESKVDEPIIRAYSMANYPEEFGI 223
           AG ++ + A                                   + R YS+A+ P+E   
Sbjct: 120 AGQHLVLWA---------------------------------GQVARPYSLASLPQEDAF 146

Query: 224 IMLNVRIATPPPNNPNVPPGQMSSYIWSLKAGDKCTISGPFGEFFAKDTDAE---MVFIG 280
           +  ++             PG+ S     L+ GD+  +    G     D D +   +  + 
Sbjct: 147 LEFHLDCRL---------PGEFSDLARQLQVGDRLRLGELRGGALQYDPDWQRRPLWLLA 197

Query: 281 GGAGMAPMRSHIFDQLKR 298
            G G+ P+   + + L++
Sbjct: 198 SGTGLGPLWGVLREALRQ 215