Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., DNA polymerase IV from Xanthobacter sp. DMC5

 Score =  189 bits (481), Expect = 9e-53
 Identities = 129/342 (37%), Positives = 185/342 (54%), Gaps = 19/342 (5%)

Query: 8   IIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQAL 67
           + HVD D F+AAVE RDNP    + L +GG +  RGV+ST  Y AR  GVRSAMP  +AL
Sbjct: 44  VAHVDCDAFYAAVEKRDNPDLAHVPLIIGGGK--RGVVSTACYIARIHGVRSAMPMFKAL 101

Query: 68  KLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTA-YQGSATLI 126
            LCP   V+   M  Y  V ++++   +  T L+EPLS+DEA+LD+S + A +Q S    
Sbjct: 102 ALCPDAVVLKPNMEKYVKVGREVRARMKALTPLVEPLSIDEAFLDLSGTEALHQASPART 161

Query: 127 AQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKIP 186
                RD+ +E+ +T S G+A  KFLAK+ASDL+KP G  V+   +  E +   P+  I 
Sbjct: 162 LARFARDVEREVGITVSVGLAANKFLAKIASDLDKPRGFSVIGQSEAAEFLAPRPVTFIW 221

Query: 187 GVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERKS 246
           GVG     KL + G     D++RA+   L  ++G  G  L + + G+D R+V  ERE KS
Sbjct: 222 GVGAAFGGKLARDGFSTIGDLQRAEPADLARRYGAEGLRLSRLAFGLDTRKVEPEREAKS 281

Query: 247 VGVEYTFSQNISTFQECWQVIEQKLY---PELDARLSRAHPQRGIIKQGI--KVKFADFQ 301
           V  E TF ++I   +     +EQ LY    E+  RL RA    GI  + +  K+K ADF+
Sbjct: 282 VSAETTFDRDIGALRP----LEQTLYALSEEVSERLKRA----GIAGRSVTLKLKSADFR 333

Query: 302 QTTIEHV--HPALELDYFHELLEQVLTRQ-QGREIRLLGLSV 340
             T       P       +    ++L ++  G   RL+G+ V
Sbjct: 334 LRTRSRTLDAPTCLAARINAAAHELLVKETDGTLFRLIGVGV 375