Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., DNA polymerase IV from Pseudomonas simiae WCS417

 Score =  311 bits (796), Expect = 2e-89
 Identities = 165/337 (48%), Positives = 223/337 (66%), Gaps = 2/337 (0%)

Query: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQ 65
           RKIIHVD DCF+AA+EMRD+P+  +  LAVGG   +RGVI+TCNY+AR +GVRSAM +  
Sbjct: 4   RKIIHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRH 63

Query: 66  ALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATL 125
           ALKLCP L +V  RM  YK  S++IQTIF+ YT LIEPLSLDEAYLDVS+S+ + GSAT 
Sbjct: 64  ALKLCPDLTIVKPRMEAYKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSSHFGGSATR 123

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           IAQ IRR +  +L++T SAGVAP KFLAK+ASD  KP+GL+V+TPD+V++ V  L + K+
Sbjct: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKL 183

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
            GVGKV  +KL + G+     +R  +   L+ +FG  G  LW  + GID+R V  +  R+
Sbjct: 184 HGVGKVTADKLARLGIEDCLQLREWNKLALVREFGSFGERLWSLARGIDDRVVQNDSRRQ 243

Query: 246 SVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTTI 305
           S+ VE T+  ++     C   + + L   L  R++R        K  +KVKF DF QTT+
Sbjct: 244 SISVENTYDVDLPDLSSCLAKLPE-LMETLAGRMARIDSSYRAGKPFVKVKFHDFTQTTL 302

Query: 306 EHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVML 342
           E      +L+ + +LL Q   R  G+ +RLLG+ V L
Sbjct: 303 EQAGAGRDLESYQQLLTQAFNR-GGKPVRLLGIGVRL 338