Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., DNA polymerase IV (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  256 bits (655), Expect = 5e-73
 Identities = 157/343 (45%), Positives = 217/343 (63%), Gaps = 14/343 (4%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           +RKIIH+DMD F+A+VE RD+P+ R  A+AVGG    RGV++TC+Y+ARKFGVRSAMP A
Sbjct: 8   LRKIIHIDMDAFYASVEQRDDPSLRGKAIAVGGGGP-RGVVATCSYEARKFGVRSAMPGA 66

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
           +A +LCP+L  V  R  VY+SVS QI+ IF R+T +I+PLSLDEAYLDV+++     SAT
Sbjct: 67  RARRLCPELLFVKPRFEVYRSVSAQIRAIFARFTDMIQPLSLDEAYLDVTQNKPGIASAT 126

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
            +AQ IRR I +E  LTASAGV+  K +AK+ASD NKPDGL VV P +  + +  +P+ +
Sbjct: 127 QVAQEIRRLIQEETGLTASAGVSYNKLIAKLASDQNKPDGLCVVRPAEGADFMARMPVRR 186

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           I G+G V  E++H+ G+  GAD+R  D   L   FG      ++ + G D+R V   +ER
Sbjct: 187 IHGIGPVTAERMHKFGIETGADLRDRDLSFLQTHFGSSALFYYRAARGEDDRPVHERQER 246

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQ-RGIIKQGIKVKFADFQQT 303
           KSV VE TF +++   +   + IE ++   L AR+ +A    R ++   +KVKFADF+  
Sbjct: 247 KSVSVEDTFFEDLVAEEALLREIE-RIAQSLWARIEKAQAYGRTVV---LKVKFADFRII 302

Query: 304 TIEHVHPA------LELDYFHELLEQVLTRQQGREIRLLGLSV 340
           T      A        +D    LL+  L  + G   RLLGL V
Sbjct: 303 TRSRSFAAPVRSVEQLVDAGRALLKAQLPLRMG--ARLLGLGV 343