Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., DNA polymerase IV from Pseudomonas putida KT2440

 Score =  304 bits (778), Expect = 3e-87
 Identities = 166/352 (47%), Positives = 226/352 (64%), Gaps = 3/352 (0%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           +RKIIHVD DCF+AA+EMRD+P      +AVGG    RGVI+TCNY+AR +GVRSAM + 
Sbjct: 3   LRKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSPDHRGVIATCNYEARAYGVRSAMSSR 62

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
            ALKLCP L +V  R   Y+  S++I TIF+ YT LIEPLSLDEAYLDVS+S  Y GSAT
Sbjct: 63  HALKLCPDLLIVKPRFEAYREASREIHTIFRDYTELIEPLSLDEAYLDVSDSQWYSGSAT 122

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
            IA+ IRR + + L++T SAGVAP KFLAK+ASD  KP+GL+V+TP++V+  V +LP+ +
Sbjct: 123 RIAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPNEVETFVAALPVAR 182

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           + GVGKV  +KL + G+     +R      L+ +FG  G  LW  + GIDER V  +  R
Sbjct: 183 LHGVGKVTADKLTRLGIETCLHLREWSRLALVREFGSFGERLWGLARGIDERAVHNDSRR 242

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           +SV VE T+  ++     C   + + L   L+ R++R        K  +KVKF DF QTT
Sbjct: 243 QSVSVENTYDTDLPDLASCLARLPE-LLDSLNERIARMDSSYRPDKPFVKVKFHDFSQTT 301

Query: 305 IEHVHPALELDYFHELLEQVLTRQQGREIRLLGLSVMLKP-ELQMKQLSMFP 355
           +E      +L+ + +LL Q   R  G+ +RLLG+ V L+      +QL +FP
Sbjct: 302 MEQAGAGRDLESYRQLLGQAFAR-GGKPVRLLGVGVRLRDLRGAHEQLELFP 352