Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., DNA polymerase IV (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  153 bits (386), Expect = 9e-42
 Identities = 114/388 (29%), Positives = 189/388 (48%), Gaps = 59/388 (15%)

Query: 4   RIRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQ---------------------- 41
           R+R+I H+DMD FFA+VE+   P  + + + +GG  ++                      
Sbjct: 11  RLRRIAHLDMDAFFASVELLRYPQLKGLPVVIGGGRRREDDMFARLRETYPEREWTGDDL 70

Query: 42  ----------------RGVISTCNYQARKFGVRSAMPTAQALKLCPQLHVVPGRMSVYKS 85
                           RGV +T  Y AR+FGV SAM   +A KLCPQ  ++P      + 
Sbjct: 71  AHIPIEFFPLLENYVGRGVATTATYAARQFGVGSAMGLMKAAKLCPQAILLPVDFDEVRR 130

Query: 86  VSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSA-TLIAQAIRRDIWQELNLTASA 144
           +S+  +   +    ++E   +DE Y+D ++    Q     ++A+ I++ I+Q   LT S 
Sbjct: 131 ISRLFKHTIREIAPVMEDRGVDEVYIDFTDVPGGQREGGRVLARLIQKSIFQATGLTCSL 190

Query: 145 GVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKIPGVGKVALEKLHQAGLYVG 204
           GVAP K +AK+AS+  KP+G+ +V  D +Q ++  LP  KI GVG  A  KL   G++  
Sbjct: 191 GVAPNKLIAKMASEFQKPNGISIVHTDDLQTLIWPLPCRKINGVGPKADAKLQGHGIHTI 250

Query: 205 ADVRRADYRKLLHQFGR-LGASLWKKSHGIDEREVVTERERKSVGVEYTFSQNISTFQEC 263
            D+ + D   L+  FG+  GA L + S G DER V TE E  S+  E TF +++   ++ 
Sbjct: 251 GDLAQRDRPWLVEHFGKSYGAWLHEVSWGRDERTVQTESEPVSMSRETTFDRDLHAVRDR 310

Query: 264 WQVIEQKLYPELDARLSRAHPQRGIIKQ--GIKVKFADFQQTTIEHVHPALELDYFHELL 321
            ++    ++ +L  +++    ++G + +  G+K+++ +FQ  T +        D      
Sbjct: 311 AEL--GAIFTQLCEQVADDLQRKGYVGKTIGVKLRYDNFQIVTRDSTIGHFTSD------ 362

Query: 322 EQVLTRQQG---------REIRLLGLSV 340
              + RQ G         R IRLLG+ V
Sbjct: 363 AASIRRQAGLCLKRVDLTRRIRLLGVRV 390