Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., DNA polymerase IV (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  380 bits (976), Expect = e-110
 Identities = 199/345 (57%), Positives = 254/345 (73%), Gaps = 3/345 (0%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           +RKIIHVDMDCFFAAVEMRDNPA R+I +A+GG  ++RGVIST NY AR+FGVRSAMPTA
Sbjct: 1   MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARQFGVRSAMPTA 60

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
            ALKLCP L ++PGR   YK  S+ ++ IF RYTSLIEPLSLDEA+LDV++S    GSAT
Sbjct: 61  MALKLCPHLTLLPGRFDAYKEASRHVRDIFSRYTSLIEPLSLDEAWLDVTDSPHCYGSAT 120

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
           LIA+ IR+ I+ EL LTASAGVAP+KFLAK+ASDLNKP+G YV+TP  V + + +LPL K
Sbjct: 121 LIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAK 180

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           IPGVGKV+  KL   GL    D+++ D   LL +FG+ G  LW++S GIDER+V +ER R
Sbjct: 181 IPGVGKVSAAKLENMGLRTCGDIQQCDLAMLLKRFGKFGRVLWERSQGIDERDVNSERLR 240

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           KSVGVE T +++I  + +C  +IE  LYPEL+ RL+   P   I +QG+K+KF DFQQTT
Sbjct: 241 KSVGVERTLAEDIHEWSDCEAIIEH-LYPELERRLAIVKPDLLIARQGVKLKFNDFQQTT 299

Query: 305 IEHVHPALELDYFHELLEQVLTRQQG-REIRLLGLSV-MLKPELQ 347
            EHV P L  +       +    ++G R +RL+GL V +L P+L+
Sbjct: 300 QEHVWPQLNKEDLITTARKTWDERRGERGVRLVGLHVTLLDPQLE 344