Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., DNA polymerase IV from Erwinia tracheiphila SCR3

 Score =  379 bits (974), Expect = e-110
 Identities = 198/345 (57%), Positives = 252/345 (73%), Gaps = 3/345 (0%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           +RKIIH+DMDCFFAAVEMRDNP+ R+I +A+GG   +RGVIST NY AR FGV SAMPTA
Sbjct: 1   MRKIIHIDMDCFFAAVEMRDNPSLRDIPIAIGGSHLKRGVISTANYPARTFGVYSAMPTA 60

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
            A+KLCP L V+PGR   YK  S  I+ IF RYT LIEPLSLDEAYLDV+ S    GSAT
Sbjct: 61  MAIKLCPHLKVIPGRFDAYKEASHHIREIFSRYTHLIEPLSLDEAYLDVTNSIHCYGSAT 120

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
           LIA+ IR+ I++EL L+ASAG+AP+KFL+K+ASDLNKP G +V+TP  +  ++ +LPL K
Sbjct: 121 LIAREIRQTIFRELGLSASAGIAPVKFLSKIASDLNKPGGQFVITPADIPAILLTLPLVK 180

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           IPGVGKV  +KL   GL    DV+ +D   LL +FG+ G  LW++ HGIDEREVVT+R R
Sbjct: 181 IPGVGKVTAKKLEAMGLLTCGDVQNSDLSALLKRFGKFGCGLWERCHGIDEREVVTDRLR 240

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           KS+GVE T S++I  +++C  +IE  LY ELD RL++    R I +QG+K+KF DFQQTT
Sbjct: 241 KSLGVERTLSEDIHHWEQCMTIIE-VLYEELDRRLAKIRQDRLIARQGVKLKFDDFQQTT 299

Query: 305 IEHVHPALELDYFHELLEQVL-TRQQGREIRLLGLSVML-KPELQ 347
            EH+   L  D F  + +Q    R+ GR +RL+GL VML  P+L+
Sbjct: 300 QEHLWSVLNKDDFMAVAKQSWDERRAGRGVRLVGLHVMLADPQLE 344