Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., Nucleotidyltransferase/DNA polymerase involved in DNA repair from Enterobacter asburiae PDN3

 Score =  399 bits (1025), Expect = e-116
 Identities = 210/345 (60%), Positives = 257/345 (74%), Gaps = 2/345 (0%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           +RKIIHVDMDCFFAAVEMRDNPA R+I +A+GG   QRGVIST NY ARKFGVRSAMPTA
Sbjct: 1   MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRVQRGVISTANYPARKFGVRSAMPTA 60

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
            ALKLCP L ++PGR   YK  S  I+ IF RYTSLIEPLSLDEAYLDV++S    GSAT
Sbjct: 61  MALKLCPHLTLLPGRFEAYKEASLHIRGIFSRYTSLIEPLSLDEAYLDVTDSVHCHGSAT 120

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
           L+AQ IR+ I+ ELNLTASAGVAP+KFLAK+ASDLNKP+G YV+TPD+V   + +LPL K
Sbjct: 121 LMAQEIRQTIFNELNLTASAGVAPVKFLAKIASDLNKPNGQYVITPDEVPAFLKTLPLGK 180

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           IPGVGKV+  KL   GL    DV+R+D   LL +FG+ G  LW++S GID+R+V +ER R
Sbjct: 181 IPGVGKVSAAKLESMGLRTCEDVQRSDLAMLLKRFGKFGRVLWERSQGIDDRDVNSERLR 240

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           KSVGVE T  ++I  + EC  +I ++LYPEL+ RLS+  P   I +QGIK+KF DFQQTT
Sbjct: 241 KSVGVERTLIEDIHDWSECETIITEQLYPELERRLSKVKPDLLIARQGIKLKFNDFQQTT 300

Query: 305 IEHVHPALELDYFHELLEQVL-TRQQGREIRLLGLSV-MLKPELQ 347
            EHV P L  D      ++    R+ GR +RL+GL V +L P+L+
Sbjct: 301 QEHVWPRLNKDDLLATAKKAWEERRGGRGVRLVGLHVTLLDPQLE 345