Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., DNA polymerase IV from Bacteroides stercoris CC31F

 Score =  254 bits (649), Expect = 2e-72
 Identities = 153/342 (44%), Positives = 211/342 (61%), Gaps = 14/342 (4%)

Query: 6   RKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQ 65
           RKIIH+DMD F+A+VE RDNP  R   +AVG H ++RGV++  +Y+AR+FGVRSAM + +
Sbjct: 4   RKIIHIDMDAFYASVEQRDNPELRGKPVAVG-HAEERGVVAAASYEARRFGVRSAMSSQK 62

Query: 66  ALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSATL 125
           A +LCPQL  +PGRM VYKSVS+QI  IF  YT +IEP+SLDEA+LDV+E+      A  
Sbjct: 63  AKRLCPQLIFIPGRMDVYKSVSRQIHEIFHEYTDVIEPISLDEAFLDVTENKPGILLAVD 122

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           IA+ I+R + + L+L ASAGV+  KFLAK+ASD  KPDGL  + PD+  + +  LP+E  
Sbjct: 123 IAREIKRKVRERLSLVASAGVSYNKFLAKIASDYRKPDGLCTIHPDQALDFIAHLPIESF 182

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
            GVG V   K+H  G++ G  +R      LL +FG++G   +  + GID R V   R RK
Sbjct: 183 WGVGPVTARKMHVLGIHTGGQLRACSQAMLLREFGKVGNIYYDFARGIDLRPVEAVRIRK 242

Query: 246 SVGVEYTFSQNISTFQECWQVIEQKLY---PELDARLSRAHPQRGIIKQGIKVKFADFQQ 302
           SVG E+T  ++I+  +    +IE  LY    EL  RL   + +   +   +K+KF DF Q
Sbjct: 243 SVGCEHTLEKDIN--RRSSVIIE--LYHTAVELVTRLEHKNFRGNTLT--LKIKFHDFSQ 296

Query: 303 TT--IEHVHPALELDYFHELLEQVLTR--QQGREIRLLGLSV 340
            T  +        LD    L +Q+L     +   IRL+GLSV
Sbjct: 297 ITRSVTQSKELTALDVILPLAKQLLREVDYEHHPIRLIGLSV 338