Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 351 a.a., DNA polymerase IV from Escherichia coli BL21

 Score =  384 bits (985), Expect = e-111
 Identities = 202/345 (58%), Positives = 254/345 (73%), Gaps = 3/345 (0%)

Query: 5   IRKIIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTA 64
           +RKIIHVDMDCFFAAVEMRDNPA R+I +A+GG  ++RGVIST NY ARKFGVRSAMPT 
Sbjct: 1   MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60

Query: 65  QALKLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVSESTAYQGSAT 124
            ALKLCP L ++PGR   YK  S  I+ IF RYTS IEPLSLDEAYLDV++S    GSAT
Sbjct: 61  MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120

Query: 125 LIAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEK 184
           LIAQ IR+ I+ EL LTASAGVAP+KFLAK+ASD+NKP+G +V+TP +V   + +LPL K
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180

Query: 185 IPGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERER 244
           IPGVGKV+  KL   GL    DV++ D   LL +FG+ G  LW++S GIDER+V +ER R
Sbjct: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240

Query: 245 KSVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGIKVKFADFQQTT 304
           KSVGVE T +++I  + EC  +IE +LYPEL+ RL++  P   I +QG+K+KF DFQQTT
Sbjct: 241 KSVGVERTMAEDIHHWSECEAIIE-RLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTT 299

Query: 305 IEHVHPAL-ELDYFHELLEQVLTRQQGREIRLLGLSV-MLKPELQ 347
            EHV P L + D      +    R+ GR +RL+GL V +L P+++
Sbjct: 300 QEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQME 344