Pairwise Alignments

Query, 360 a.a., DNA polymerase IV from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., DNA polymerase IV from Agrobacterium fabrum C58

 Score =  175 bits (444), Expect = 2e-48
 Identities = 123/340 (36%), Positives = 187/340 (55%), Gaps = 15/340 (4%)

Query: 8   IIHVDMDCFFAAVEMRDNPAYREIALAVGGHEKQRGVISTCNYQARKFGVRSAMPTAQAL 67
           I H+D D F+A+VE RDNP   +  + VGG +  RGV+ST  Y AR  GVRSAMP  +AL
Sbjct: 23  IAHIDCDAFYASVEKRDNPELADKPVIVGGGK--RGVVSTACYIARIHGVRSAMPMFKAL 80

Query: 68  KLCPQLHVVPGRMSVYKSVSQQIQTIFQRYTSLIEPLSLDEAYLDVS--ESTAYQGSATL 125
           + CP   V+   M  Y  V ++I+T+ Q  T L++PLS+DEA+LD+S  E   +   A +
Sbjct: 81  EACPDAVVIKPDMEKYSRVGREIRTMMQELTPLVQPLSIDEAFLDLSGTEKLHHDPPARV 140

Query: 126 IAQAIRRDIWQELNLTASAGVAPIKFLAKVASDLNKPDGLYVVTPDKVQEMVDSLPLEKI 185
           +A+   R + +E+ ++ SAG++  KFLAKVASDL KP G  VV   +    + + P+  I
Sbjct: 141 LAKFTGR-VEKEVGVSVSAGLSYCKFLAKVASDLQKPRGFSVVGEAEALSFLAARPVTTI 199

Query: 186 PGVGKVALEKLHQAGLYVGADVRRADYRKLLHQFGRLGASLWKKSHGIDEREVVTERERK 245
            GVGK     L   G+ + A ++  +  +L+ ++G +G  L++ + GIDER V      K
Sbjct: 200 WGVGKAFAATLEADGIRMIAQLQEMEESELMRRYGVMGQRLFRLARGIDERHVHNNDPVK 259

Query: 246 SVGVEYTFSQNISTFQECWQVIEQKLYPELDARLSRAHPQRGIIKQGI--KVKFADFQQT 303
           SV  E TF  +IS  ++   ++ + L  ++  RL ++    GI  Q +  K+K ADF+  
Sbjct: 260 SVSSETTFFHDISRHEDLVPIL-RSLSEKVAWRLKKS----GIAGQTVVLKMKTADFKSR 314

Query: 304 TIEH--VHPALELD-YFHELLEQVLTRQQGREIRLLGLSV 340
           T       P    D  F   L  +     G + RL+G+ V
Sbjct: 315 TRNRRLDDPTQLADRIFRTGLALLEKETDGTKFRLIGIGV 354