Pairwise Alignments

Query, 156 a.a., N utilization substance protein B from Vibrio cholerae E7946 ATCC 55056

Subject, 139 a.a., transcription antitermination protein NusB (NCBI) from Escherichia coli BW25113

 Score =  156 bits (395), Expect = 1e-43
 Identities = 80/149 (53%), Positives = 110/149 (73%), Gaps = 14/149 (9%)

Query: 5   VKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVS 64
           +KPAARR AR+ A+QA+YSWQ+++ ++A +E QFL      E++ +         + DV 
Sbjct: 1   MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLA-----EQDVK---------DVDVL 46

Query: 65  YFRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINE 124
           YFR+LLAGV  N   LD  ++P++SR +++L  +E A+LR+A+YE+++R DVPYKV INE
Sbjct: 47  YFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106

Query: 125 AIELAKVFAAEDSHKFVNGVLDKAAPHVR 153
           AIELAK F AEDSHKFVNGVLDKAAP +R
Sbjct: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIR 135