Pairwise Alignments

Query, 156 a.a., N utilization substance protein B from Vibrio cholerae E7946 ATCC 55056

Subject, 139 a.a., transcription antitermination factor NusB from Escherichia coli ECRC62

 Score =  157 bits (398), Expect = 5e-44
 Identities = 81/149 (54%), Positives = 110/149 (73%), Gaps = 14/149 (9%)

Query: 5   VKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVS 64
           VKPAARR AR+ A+QA+YSWQ+++ ++A +E QFL      E++ +         + DV 
Sbjct: 1   VKPAARRRARECAVQALYSWQLSQNDIADVEYQFLA-----EQDVK---------DVDVL 46

Query: 65  YFRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINE 124
           YFR+LLAGV  N   LD  ++P++SR +++L  +E A+LR+A+YE+++R DVPYKV INE
Sbjct: 47  YFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINE 106

Query: 125 AIELAKVFAAEDSHKFVNGVLDKAAPHVR 153
           AIELAK F AEDSHKFVNGVLDKAAP +R
Sbjct: 107 AIELAKSFGAEDSHKFVNGVLDKAAPVIR 135